miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24218 5' -53.6 NC_005263.2 + 7772 1.11 0.000946
Target:  5'- gAUCGGGCGUACAUCGACAAACCGCGCa -3'
miRNA:   3'- -UAGCCCGCAUGUAGCUGUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 9822 0.83 0.090558
Target:  5'- --aGGGCGUGCAUCacguuGACGAACgGCGCg -3'
miRNA:   3'- uagCCCGCAUGUAG-----CUGUUUGgCGCG- -5'
24218 5' -53.6 NC_005263.2 + 24781 0.78 0.174293
Target:  5'- -aCGGGCG-GCGUCGGCGGcucGCCGgGCg -3'
miRNA:   3'- uaGCCCGCaUGUAGCUGUU---UGGCgCG- -5'
24218 5' -53.6 NC_005263.2 + 26347 0.75 0.297136
Target:  5'- -gCGGGaCGUugGUCGugGucAugCGCGCg -3'
miRNA:   3'- uaGCCC-GCAugUAGCugU--UugGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 27274 0.75 0.304774
Target:  5'- -cCGGGUGUguggAUGUCGAUAccuGCCGCGCc -3'
miRNA:   3'- uaGCCCGCA----UGUAGCUGUu--UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 34798 0.74 0.336823
Target:  5'- cUCGcgauGcCGUACAUCGACAAcugGCUGCGCa -3'
miRNA:   3'- uAGCc---C-GCAUGUAGCUGUU---UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 6477 0.73 0.353745
Target:  5'- -gUGGGCcgcaGUGCAaccaggcagUCGACGAACgGCGCg -3'
miRNA:   3'- uaGCCCG----CAUGU---------AGCUGUUUGgCGCG- -5'
24218 5' -53.6 NC_005263.2 + 14048 0.73 0.362429
Target:  5'- -aCGGGCGccGCGUCGagcgcauugaGCGcGCCGCGCc -3'
miRNA:   3'- uaGCCCGCa-UGUAGC----------UGUuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 5595 0.73 0.380236
Target:  5'- cGUCGGGCauccGCA-CGGCGAgGCCGUGCg -3'
miRNA:   3'- -UAGCCCGca--UGUaGCUGUU-UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 22378 0.73 0.389356
Target:  5'- uGUCGaucGGCG-GCAUCgGGCAGGCCGCGa -3'
miRNA:   3'- -UAGC---CCGCaUGUAG-CUGUUUGGCGCg -5'
24218 5' -53.6 NC_005263.2 + 36561 0.73 0.389356
Target:  5'- cGUCGaGCGcgGCAaggugaCGACGAACCGCGCc -3'
miRNA:   3'- -UAGCcCGCa-UGUa-----GCUGUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 39244 0.72 0.398618
Target:  5'- -aCGGGCcgcGUAuccCGUCGGcCGAGCUGCGCg -3'
miRNA:   3'- uaGCCCG---CAU---GUAGCU-GUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 3232 0.72 0.398618
Target:  5'- cUCGGGCGacgACAgguaGGCGcgaucGCCGCGCa -3'
miRNA:   3'- uAGCCCGCa--UGUag--CUGUu----UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 32897 0.72 0.398618
Target:  5'- uUCGuGGCGUcgGCGUCGGCGGcCCGCu- -3'
miRNA:   3'- uAGC-CCGCA--UGUAGCUGUUuGGCGcg -5'
24218 5' -53.6 NC_005263.2 + 2671 0.72 0.408021
Target:  5'- -gCaGGCGUGCGUUGugGuagcuGAUCGCGCg -3'
miRNA:   3'- uaGcCCGCAUGUAGCugU-----UUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 19139 0.72 0.408021
Target:  5'- -cCGGGCGcuugcGCGUCGuCGuGACCGUGCa -3'
miRNA:   3'- uaGCCCGCa----UGUAGCuGU-UUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 26134 0.72 0.437041
Target:  5'- -gCGGGuCG-ACGUUGGCGAucaACUGCGCa -3'
miRNA:   3'- uaGCCC-GCaUGUAGCUGUU---UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 25557 0.72 0.446975
Target:  5'- gAUCGcGaGCGcgACGUCGGCGu-CCGCGCc -3'
miRNA:   3'- -UAGC-C-CGCa-UGUAGCUGUuuGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 17187 0.72 0.446975
Target:  5'- cUCGcGGCGUACGcCGuC--GCCGCGCu -3'
miRNA:   3'- uAGC-CCGCAUGUaGCuGuuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 30914 0.72 0.446975
Target:  5'- aGUCGagcgcggcgacGGCGUACG-CG-CGAGCUGCGCa -3'
miRNA:   3'- -UAGC-----------CCGCAUGUaGCuGUUUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.