miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24218 5' -53.6 NC_005263.2 + 26347 0.75 0.297136
Target:  5'- -gCGGGaCGUugGUCGugGucAugCGCGCg -3'
miRNA:   3'- uaGCCC-GCAugUAGCugU--UugGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 41749 0.69 0.578869
Target:  5'- uUCGGGCGgcacgGCGcgaucaacgaggagaUCGGCGcgggcGACuCGCGCg -3'
miRNA:   3'- uAGCCCGCa----UGU---------------AGCUGU-----UUG-GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 44784 0.68 0.630331
Target:  5'- -gCGGcGCGcagACGUUGAac-ACCGCGCg -3'
miRNA:   3'- uaGCC-CGCa--UGUAGCUguuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 37462 0.66 0.792548
Target:  5'- -gCGcGGCGUccauguguacuGCGgcgUGACGAACgGCGCc -3'
miRNA:   3'- uaGC-CCGCA-----------UGUa--GCUGUUUGgCGCG- -5'
24218 5' -53.6 NC_005263.2 + 39244 0.72 0.398618
Target:  5'- -aCGGGCcgcGUAuccCGUCGGcCGAGCUGCGCg -3'
miRNA:   3'- uaGCCCG---CAU---GUAGCU-GUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 19139 0.72 0.408021
Target:  5'- -cCGGGCGcuugcGCGUCGuCGuGACCGUGCa -3'
miRNA:   3'- uaGCCCGCa----UGUAGCuGU-UUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 17187 0.72 0.446975
Target:  5'- cUCGcGGCGUACGcCGuC--GCCGCGCu -3'
miRNA:   3'- uAGC-CCGCAUGUaGCuGuuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 25557 0.72 0.446975
Target:  5'- gAUCGcGaGCGcgACGUCGGCGu-CCGCGCc -3'
miRNA:   3'- -UAGC-C-CGCa-UGUAGCUGUuuGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 30258 0.7 0.541401
Target:  5'- -gCGGuaGU-CGUCGGCGAagcGCUGCGCa -3'
miRNA:   3'- uaGCCcgCAuGUAGCUGUU---UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 29217 0.69 0.574427
Target:  5'- -cCGGcGCGUAuuugcCGUCGGCGcgcAGCgGCGCg -3'
miRNA:   3'- uaGCC-CGCAU-----GUAGCUGU---UUGgCGCG- -5'
24218 5' -53.6 NC_005263.2 + 43879 0.69 0.562254
Target:  5'- -aCGGGCuaggccgcUACcUCGACGacccgucGACCGCGCg -3'
miRNA:   3'- uaGCCCGc-------AUGuAGCUGU-------UUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 21102 0.7 0.509032
Target:  5'- -gUGGGCGg----CGACGAGCCcgGCGCa -3'
miRNA:   3'- uaGCCCGCauguaGCUGUUUGG--CGCG- -5'
24218 5' -53.6 NC_005263.2 + 27274 0.75 0.304774
Target:  5'- -cCGGGUGUguggAUGUCGAUAccuGCCGCGCc -3'
miRNA:   3'- uaGCCCGCA----UGUAGCUGUu--UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 3918 0.69 0.563358
Target:  5'- -cCGGGCG-GCAauggCGGCAGGCCGaccgGCa -3'
miRNA:   3'- uaGCCCGCaUGUa---GCUGUUUGGCg---CG- -5'
24218 5' -53.6 NC_005263.2 + 14048 0.73 0.362429
Target:  5'- -aCGGGCGccGCGUCGagcgcauugaGCGcGCCGCGCc -3'
miRNA:   3'- uaGCCCGCa-UGUAGC----------UGUuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 10152 0.7 0.509032
Target:  5'- -cCGGcGCG-GCAUCGGCcGGuuGCGCa -3'
miRNA:   3'- uaGCC-CGCaUGUAGCUGuUUggCGCG- -5'
24218 5' -53.6 NC_005263.2 + 19051 0.69 0.574427
Target:  5'- -gCGGGCc-GCGUCGugcuauccaAGGCCGCGCg -3'
miRNA:   3'- uaGCCCGcaUGUAGCug-------UUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 11535 0.69 0.596705
Target:  5'- -gCGGcGCGguuCGUCGuCAccuuGCCGCGCu -3'
miRNA:   3'- uaGCC-CGCau-GUAGCuGUu---UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 5595 0.73 0.380236
Target:  5'- cGUCGGGCauccGCA-CGGCGAgGCCGUGCg -3'
miRNA:   3'- -UAGCCCGca--UGUaGCUGUU-UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 26134 0.72 0.437041
Target:  5'- -gCGGGuCG-ACGUUGGCGAucaACUGCGCa -3'
miRNA:   3'- uaGCCC-GCaUGUAGCUGUU---UGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.