miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24230 5' -59.6 NC_005263.2 + 40814 0.66 0.489608
Target:  5'- -cCGGUGAcgaucGCgGCGAUCGgguugguguucuuUGCgGUCGCg -3'
miRNA:   3'- gaGCCACU-----CG-CGCUAGC-------------ACGgCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 22731 0.66 0.480652
Target:  5'- -gCGGcgcaUGAGCGCaccGAUCaG-GCCGCCGa -3'
miRNA:   3'- gaGCC----ACUCGCG---CUAG-CaCGGCGGCg -5'
24230 5' -59.6 NC_005263.2 + 5315 0.66 0.480652
Target:  5'- uUCGGgucuuucGCGCcuucgcgcugGAUCGUcacGCCGCCGUg -3'
miRNA:   3'- gAGCCacu----CGCG----------CUAGCA---CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 47325 0.66 0.480652
Target:  5'- -----cGAGCGCGGacagcguacccgUCGUGCCgGCCGg -3'
miRNA:   3'- gagccaCUCGCGCU------------AGCACGG-CGGCg -5'
24230 5' -59.6 NC_005263.2 + 27860 0.66 0.480652
Target:  5'- -aCGGcGAuguaccGCGCGAagcauggCcUGCCGCCGCa -3'
miRNA:   3'- gaGCCaCU------CGCGCUa------GcACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 12629 0.66 0.480652
Target:  5'- -gCGGgcGGGCGCuacggCGccgccgGCCGCCGCg -3'
miRNA:   3'- gaGCCa-CUCGCGcua--GCa-----CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 2696 0.66 0.480652
Target:  5'- -gCGaUGAaccGCGCGGUCG-GCCuGUCGCg -3'
miRNA:   3'- gaGCcACU---CGCGCUAGCaCGG-CGGCG- -5'
24230 5' -59.6 NC_005263.2 + 36397 0.66 0.470796
Target:  5'- -gCGGUGcauaucgcauGGCGCaGGacgucgCGUGUCGCUGCa -3'
miRNA:   3'- gaGCCAC----------UCGCG-CUa-----GCACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 4793 0.66 0.470796
Target:  5'- --gGGUGAGCccGCGucgCGUGacgcucauaCGCCGCc -3'
miRNA:   3'- gagCCACUCG--CGCua-GCACg--------GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 21209 0.66 0.470796
Target:  5'- -gCGaGUGGGUGCGuuUCGaGCgCGUCGCa -3'
miRNA:   3'- gaGC-CACUCGCGCu-AGCaCG-GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 28540 0.66 0.461043
Target:  5'- aCUCGGgaucgauguacGAGUauGCGAUCGUGCC-CUGa -3'
miRNA:   3'- -GAGCCa----------CUCG--CGCUAGCACGGcGGCg -5'
24230 5' -59.6 NC_005263.2 + 38329 0.66 0.461043
Target:  5'- aUCGaUGcgcGCGCGAcCGUGCaCGCgGCg -3'
miRNA:   3'- gAGCcACu--CGCGCUaGCACG-GCGgCG- -5'
24230 5' -59.6 NC_005263.2 + 17642 0.66 0.461043
Target:  5'- -cCGGaUGuGGCGCaacgCGaagGCCGCCGCg -3'
miRNA:   3'- gaGCC-AC-UCGCGcua-GCa--CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 14289 0.66 0.461043
Target:  5'- -cUGaUGcAGCGCGAUCGUcauGCCGUCGa -3'
miRNA:   3'- gaGCcAC-UCGCGCUAGCA---CGGCGGCg -5'
24230 5' -59.6 NC_005263.2 + 333 0.66 0.461043
Target:  5'- gCUCGGUG-GCGUGAcgaccacaUCGaacgGUaCGCCGUg -3'
miRNA:   3'- -GAGCCACuCGCGCU--------AGCa---CG-GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 30267 0.66 0.451399
Target:  5'- gUCGGcGAagcgcuGCGCaAUCGgGCCGCgCGCg -3'
miRNA:   3'- gAGCCaCU------CGCGcUAGCaCGGCG-GCG- -5'
24230 5' -59.6 NC_005263.2 + 21892 0.66 0.451399
Target:  5'- -gUGGUuu-CGCGAaCG-GCCGCCGCa -3'
miRNA:   3'- gaGCCAcucGCGCUaGCaCGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 38653 0.66 0.451399
Target:  5'- gUCGccGUGAGCGCG-UCGgacgGCaacgCGUCGCa -3'
miRNA:   3'- gAGC--CACUCGCGCuAGCa---CG----GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 44976 0.66 0.451399
Target:  5'- gUCGGcGAGCGCGGccaggaUCGgGCCGaCCu- -3'
miRNA:   3'- gAGCCaCUCGCGCU------AGCaCGGC-GGcg -5'
24230 5' -59.6 NC_005263.2 + 1794 0.66 0.445665
Target:  5'- -aCGGcguucGAGC-CGAUCGUcaguuccuggaugcuGCCGCCGUc -3'
miRNA:   3'- gaGCCa----CUCGcGCUAGCA---------------CGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.