miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24231 5' -58 NC_005263.2 + 14106 0.66 0.509968
Target:  5'- gCGGCGCccguGGCCGAACcgucgccgucGCUGCGCc- -3'
miRNA:   3'- -GCCGCGuc--CUGGCUUGu---------CGACGUGaa -5'
24231 5' -58 NC_005263.2 + 21635 0.66 0.509968
Target:  5'- gCGGCGCcGGAaugggCGAAUugGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGuCCUg----GCUUG--UCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 17748 0.66 0.509968
Target:  5'- uCGGUGCGGucgaGCgCGAGCAGCgugaGCGCg- -3'
miRNA:   3'- -GCCGCGUCc---UG-GCUUGUCGa---CGUGaa -5'
24231 5' -58 NC_005263.2 + 32852 0.66 0.506811
Target:  5'- aGGCGCGGG-CCGAcaccgagaaccccgAC-GCgGCGCUg -3'
miRNA:   3'- gCCGCGUCCuGGCU--------------UGuCGaCGUGAa -5'
24231 5' -58 NC_005263.2 + 6505 0.66 0.499477
Target:  5'- aGGCGUcaAGGAUUGAAaCAGCgaaagcgGCGCg- -3'
miRNA:   3'- gCCGCG--UCCUGGCUU-GUCGa------CGUGaa -5'
24231 5' -58 NC_005263.2 + 36039 0.66 0.499477
Target:  5'- gCGGuCGCcuugauGGGAaucaCGAucaggcucACAGCUGCACUa -3'
miRNA:   3'- -GCC-GCG------UCCUg---GCU--------UGUCGACGUGAa -5'
24231 5' -58 NC_005263.2 + 1644 0.66 0.499477
Target:  5'- gCGGCGUAGccCUGGAUGcGCUGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGU-CGACGUGaa -5'
24231 5' -58 NC_005263.2 + 22899 0.66 0.499477
Target:  5'- aCGGCGUucguGCCGGACggaggugcccaAGCUGCGCg- -3'
miRNA:   3'- -GCCGCGucc-UGGCUUG-----------UCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 12706 0.66 0.499477
Target:  5'- cCGGCGUAgGGGCCGucCGGCUcgguguucagccGCGCc- -3'
miRNA:   3'- -GCCGCGU-CCUGGCuuGUCGA------------CGUGaa -5'
24231 5' -58 NC_005263.2 + 42085 0.66 0.499477
Target:  5'- uGGCGCGGccGGCCGcACuGCcgGCACg- -3'
miRNA:   3'- gCCGCGUC--CUGGCuUGuCGa-CGUGaa -5'
24231 5' -58 NC_005263.2 + 43643 0.66 0.489082
Target:  5'- cCGcGCGCAcGGACgaaGAAguGCUcGCACUg -3'
miRNA:   3'- -GC-CGCGU-CCUGg--CUUguCGA-CGUGAa -5'
24231 5' -58 NC_005263.2 + 7048 0.66 0.475723
Target:  5'- uGGCGCaucgcgccaauggcAGGugCGAGC-GCUGCGa-- -3'
miRNA:   3'- gCCGCG--------------UCCugGCUUGuCGACGUgaa -5'
24231 5' -58 NC_005263.2 + 363 0.66 0.468606
Target:  5'- uCGGCGCu---UUGAACAGCUGCAg-- -3'
miRNA:   3'- -GCCGCGuccuGGCUUGUCGACGUgaa -5'
24231 5' -58 NC_005263.2 + 7916 0.66 0.468606
Target:  5'- gGGCGCGGuGAucuuccgcCCGuucGCGGUUGCGCa- -3'
miRNA:   3'- gCCGCGUC-CU--------GGCu--UGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 20760 0.66 0.465572
Target:  5'- cCGGCGCAGGuuucgcgccGCCGAACAcgcuuucgacggccGCgacgagcgGCGCg- -3'
miRNA:   3'- -GCCGCGUCC---------UGGCUUGU--------------CGa-------CGUGaa -5'
24231 5' -58 NC_005263.2 + 38709 0.66 0.458533
Target:  5'- gCGGCGCGc--CCGGcuGCAGCUGaCGCUUc -3'
miRNA:   3'- -GCCGCGUccuGGCU--UGUCGAC-GUGAA- -5'
24231 5' -58 NC_005263.2 + 43637 0.66 0.458533
Target:  5'- gCGGCGCuGuGCCG-ACGGCgGCAUUg -3'
miRNA:   3'- -GCCGCGuCcUGGCuUGUCGaCGUGAa -5'
24231 5' -58 NC_005263.2 + 35093 0.66 0.458533
Target:  5'- cCGGUGUcGGAC--GGCAGCUGUACg- -3'
miRNA:   3'- -GCCGCGuCCUGgcUUGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 20958 0.67 0.448578
Target:  5'- cCGcGCGCugucGGacaucGCCGAcGCGGCUGCGCg- -3'
miRNA:   3'- -GC-CGCGu---CC-----UGGCU-UGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 39236 0.67 0.448578
Target:  5'- cCGGCaGCAcGGGCCGcguaucccgucGGCcgAGCUGCGCg- -3'
miRNA:   3'- -GCCG-CGU-CCUGGC-----------UUG--UCGACGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.