Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24233 | 5' | -53.8 | NC_005263.2 | + | 45084 | 0.65 | 0.786078 |
Target: 5'- aCGAUCuGaaguucgcgcgcuaCGUCGCGGCGgaugcgccgGCGAGCg -3' miRNA: 3'- -GCUAGuC--------------GCAGCGUCGCaag------CGCUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 17533 | 0.66 | 0.768782 |
Target: 5'- ---aCAGCGcgCGCAGCGg-CGUGAAg -3' miRNA: 3'- gcuaGUCGCa-GCGUCGCaaGCGCUUg -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 18697 | 0.66 | 0.779011 |
Target: 5'- ---cUAGCGgCGCGGCaggCGCGGGCg -3' miRNA: 3'- gcuaGUCGCaGCGUCGcaaGCGCUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 13656 | 0.66 | 0.779011 |
Target: 5'- aCGGUC-GUG-CGCAccGCG-UCGCGAAUg -3' miRNA: 3'- -GCUAGuCGCaGCGU--CGCaAGCGCUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 17767 | 0.66 | 0.737271 |
Target: 5'- uGAUCGGCaaGUCGC-GCGaUUCGCa--- -3' miRNA: 3'- gCUAGUCG--CAGCGuCGC-AAGCGcuug -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 30212 | 0.66 | 0.746843 |
Target: 5'- uGAUCGGCG-CGCcGCcggucgacugaucGUUCGCGGc- -3' miRNA: 3'- gCUAGUCGCaGCGuCG-------------CAAGCGCUug -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 18603 | 0.66 | 0.758408 |
Target: 5'- cCGA-CGGaCGcCGCagcGGCGUUCGCGGc- -3' miRNA: 3'- -GCUaGUC-GCaGCG---UCGCAAGCGCUug -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 35456 | 0.66 | 0.768782 |
Target: 5'- gCGGU-AGCGUUGaCAGCGggCGcCGAAa -3' miRNA: 3'- -GCUAgUCGCAGC-GUCGCaaGC-GCUUg -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 9220 | 0.66 | 0.768782 |
Target: 5'- uGA-CGGUGcCGuCGGCGUUCagcacgGCGAACg -3' miRNA: 3'- gCUaGUCGCaGC-GUCGCAAG------CGCUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 954 | 0.66 | 0.737271 |
Target: 5'- gCGAgCGGCGaCGUAGCGgcggUCGCcuGCg -3' miRNA: 3'- -GCUaGUCGCaGCGUCGCa---AGCGcuUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 18758 | 0.66 | 0.737271 |
Target: 5'- gCGAUCguaGGCGgCGCGGUGcUCGCGc-- -3' miRNA: 3'- -GCUAG---UCGCaGCGUCGCaAGCGCuug -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 32098 | 0.66 | 0.737271 |
Target: 5'- gCGG-CGGCGUCGguGCGau--CGAGCg -3' miRNA: 3'- -GCUaGUCGCAGCguCGCaagcGCUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 28854 | 0.66 | 0.779011 |
Target: 5'- uCGAUCugcgAGuCGUCGCgccagaagccGGCuUUCGUGAGCg -3' miRNA: 3'- -GCUAG----UC-GCAGCG----------UCGcAAGCGCUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 41549 | 0.66 | 0.768782 |
Target: 5'- aCGcgCGGCGcgcCGUGGCGgcgaUGCGAGCu -3' miRNA: 3'- -GCuaGUCGCa--GCGUCGCaa--GCGCUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 17832 | 0.66 | 0.768782 |
Target: 5'- gCGcgCGGCccgauugCGCAGCGcUUCGCcGACg -3' miRNA: 3'- -GCuaGUCGca-----GCGUCGC-AAGCGcUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 1446 | 0.66 | 0.758408 |
Target: 5'- gCGA--GGCuUCGCGGCGcUCGCGGc- -3' miRNA: 3'- -GCUagUCGcAGCGUCGCaAGCGCUug -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 20106 | 0.66 | 0.755269 |
Target: 5'- uCGAcCAGCGUCGCcGCGcaggguuacggcaagCGCGAc- -3' miRNA: 3'- -GCUaGUCGCAGCGuCGCaa-------------GCGCUug -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 36641 | 0.66 | 0.747901 |
Target: 5'- ---aCAGUG-CGCGGCag-CGCGAGCu -3' miRNA: 3'- gcuaGUCGCaGCGUCGcaaGCGCUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 43207 | 0.66 | 0.747901 |
Target: 5'- gCGA-CGGCGcgcuaUCGCAGCGcgCGCuacaugguGAGCg -3' miRNA: 3'- -GCUaGUCGC-----AGCGUCGCaaGCG--------CUUG- -5' |
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24233 | 5' | -53.8 | NC_005263.2 | + | 43359 | 0.66 | 0.737271 |
Target: 5'- uCGAugUCGGUGaaaGCuGGCGUgcUCGCGGGCg -3' miRNA: 3'- -GCU--AGUCGCag-CG-UCGCA--AGCGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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