miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24233 5' -53.8 NC_005263.2 + 954 0.66 0.737271
Target:  5'- gCGAgCGGCGaCGUAGCGgcggUCGCcuGCg -3'
miRNA:   3'- -GCUaGUCGCaGCGUCGCa---AGCGcuUG- -5'
24233 5' -53.8 NC_005263.2 + 1446 0.66 0.758408
Target:  5'- gCGA--GGCuUCGCGGCGcUCGCGGc- -3'
miRNA:   3'- -GCUagUCGcAGCGUCGCaAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 2213 0.67 0.681615
Target:  5'- gCGAUC-GUGuaguuguUCGCcGCGUUCGCGuACg -3'
miRNA:   3'- -GCUAGuCGC-------AGCGuCGCAAGCGCuUG- -5'
24233 5' -53.8 NC_005263.2 + 2852 1.1 0.000986
Target:  5'- uCGAUCAGCGUCGCAGCGUUCGCGAACg -3'
miRNA:   3'- -GCUAGUCGCAGCGUCGCAAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 3385 0.67 0.726533
Target:  5'- uCGAcgGGCGUCGCcGuCGUU-GCGGGCa -3'
miRNA:   3'- -GCUagUCGCAGCGuC-GCAAgCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 3479 0.72 0.419024
Target:  5'- uCGAUCAGCuGcCGCAGCGagucgggcaaguugUCGCGcGCg -3'
miRNA:   3'- -GCUAGUCG-CaGCGUCGCa-------------AGCGCuUG- -5'
24233 5' -53.8 NC_005263.2 + 3529 0.68 0.614611
Target:  5'- uGAUCGGCGUaaagcgggaucagCGCAGUGc-CGCGcAGCg -3'
miRNA:   3'- gCUAGUCGCA-------------GCGUCGCaaGCGC-UUG- -5'
24233 5' -53.8 NC_005263.2 + 3568 0.73 0.378112
Target:  5'- ----aAGCGUCGCGGCGUacuccuugaucuUCGCGAc- -3'
miRNA:   3'- gcuagUCGCAGCGUCGCA------------AGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 5205 0.7 0.538337
Target:  5'- gGcgCGGCGUCGCuacCG-UCGCGAAUu -3'
miRNA:   3'- gCuaGUCGCAGCGuc-GCaAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 5426 0.72 0.396374
Target:  5'- gCGG-CAGCGUCGUuagcaucuGCGaaCGCGAACa -3'
miRNA:   3'- -GCUaGUCGCAGCGu-------CGCaaGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 6825 0.67 0.682724
Target:  5'- uCGAUCuGCGggaagCGCAGCGacgGCGAcACg -3'
miRNA:   3'- -GCUAGuCGCa----GCGUCGCaagCGCU-UG- -5'
24233 5' -53.8 NC_005263.2 + 9177 0.69 0.593405
Target:  5'- cCGAUCAGCG-CGaAGCGa-CGCGggUg -3'
miRNA:   3'- -GCUAGUCGCaGCgUCGCaaGCGCuuG- -5'
24233 5' -53.8 NC_005263.2 + 9220 0.66 0.768782
Target:  5'- uGA-CGGUGcCGuCGGCGUUCagcacgGCGAACg -3'
miRNA:   3'- gCUaGUCGCaGC-GUCGCAAG------CGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 9540 0.67 0.69378
Target:  5'- gCGG-CAGCGaccgaCGCGGCGcUCGCGGc- -3'
miRNA:   3'- -GCUaGUCGCa----GCGUCGCaAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 9876 0.7 0.506132
Target:  5'- uCGAUCAGCc-CGCagagcuucucGGCGgccaUCGCGAGCg -3'
miRNA:   3'- -GCUAGUCGcaGCG----------UCGCa---AGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 10163 0.72 0.434554
Target:  5'- aGcUUGGCGUCGCcgagAGCGcgaaUCGCGAGCa -3'
miRNA:   3'- gCuAGUCGCAGCG----UCGCa---AGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 10855 0.7 0.542687
Target:  5'- gCGGgcuaCGGCGUCGCGGCGgaacUcggcaccggcgcgcgUCGUGAGCg -3'
miRNA:   3'- -GCUa---GUCGCAGCGUCGC----A---------------AGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 12147 0.67 0.69378
Target:  5'- gCGGUCgAGCGccuugcaCGCAGCGUcaacgaUCGCGGc- -3'
miRNA:   3'- -GCUAG-UCGCa------GCGUCGCA------AGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 12526 0.68 0.615729
Target:  5'- gGGUUGGCGuUCGCAuucaCGUUCGCGGc- -3'
miRNA:   3'- gCUAGUCGC-AGCGUc---GCAAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 12531 0.67 0.715697
Target:  5'- cCGGUCAGauucugacgGcCGCAcaacuaaaugcuGCGUUUGCGAACg -3'
miRNA:   3'- -GCUAGUCg--------CaGCGU------------CGCAAGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.