miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24233 5' -53.8 NC_005263.2 + 2852 1.1 0.000986
Target:  5'- uCGAUCAGCGUCGCAGCGUUCGCGAACg -3'
miRNA:   3'- -GCUAGUCGCAGCGUCGCAAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 2213 0.67 0.681615
Target:  5'- gCGAUC-GUGuaguuguUCGCcGCGUUCGCGuACg -3'
miRNA:   3'- -GCUAGuCGC-------AGCGuCGCAAGCGCuUG- -5'
24233 5' -53.8 NC_005263.2 + 34009 0.67 0.682724
Target:  5'- uGG-CuGCGUCGCGGCGcgCGauccaGAGCu -3'
miRNA:   3'- gCUaGuCGCAGCGUCGCaaGCg----CUUG- -5'
24233 5' -53.8 NC_005263.2 + 13656 0.66 0.779011
Target:  5'- aCGGUC-GUG-CGCAccGCG-UCGCGAAUg -3'
miRNA:   3'- -GCUAGuCGCaGCGU--CGCaAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 27403 0.73 0.387172
Target:  5'- cCGGccugCAGCGUCGUAGCGagugcugUCGCGucGCg -3'
miRNA:   3'- -GCUa---GUCGCAGCGUCGCa------AGCGCu-UG- -5'
24233 5' -53.8 NC_005263.2 + 5426 0.72 0.396374
Target:  5'- gCGG-CAGCGUCGUuagcaucuGCGaaCGCGAACa -3'
miRNA:   3'- -GCUaGUCGCAGCGu-------CGCaaGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 5205 0.7 0.538337
Target:  5'- gGcgCGGCGUCGCuacCG-UCGCGAAUu -3'
miRNA:   3'- gCuaGUCGCAGCGuc-GCaAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 42118 0.7 0.538337
Target:  5'- aCGAggaUAGCGUCGUgcugcgcgacgaGGCGUgUCGCGAGg -3'
miRNA:   3'- -GCUa--GUCGCAGCG------------UCGCA-AGCGCUUg -5'
24233 5' -53.8 NC_005263.2 + 29232 0.69 0.582289
Target:  5'- -cGUCGGCG-CGCAGCGgcgCGcCGAGg -3'
miRNA:   3'- gcUAGUCGCaGCGUCGCaa-GC-GCUUg -5'
24233 5' -53.8 NC_005263.2 + 45166 0.68 0.671618
Target:  5'- --uUCGGCGgcggCGaUGGCGcaUUCGCGAGCa -3'
miRNA:   3'- gcuAGUCGCa---GC-GUCGC--AAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 12526 0.68 0.615729
Target:  5'- gGGUUGGCGuUCGCAuucaCGUUCGCGGc- -3'
miRNA:   3'- gCUAGUCGC-AGCGUc---GCAAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 33406 0.69 0.560194
Target:  5'- gGAUCGGCGUCGaucgccuugAGCGccgCGCGcGCg -3'
miRNA:   3'- gCUAGUCGCAGCg--------UCGCaa-GCGCuUG- -5'
24233 5' -53.8 NC_005263.2 + 34578 0.78 0.182398
Target:  5'- aCGGUCAGCGUCGCuugauuacUCGCGGACg -3'
miRNA:   3'- -GCUAGUCGCAGCGucgca---AGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 31932 0.68 0.631396
Target:  5'- aCGAUUuuGCGuUCGCGGCGUcugccauggcuuagcUCGUGAGa -3'
miRNA:   3'- -GCUAGu-CGC-AGCGUCGCA---------------AGCGCUUg -5'
24233 5' -53.8 NC_005263.2 + 24137 0.73 0.343321
Target:  5'- cCGAUUuGCGUCGCGGU---UGCGAACg -3'
miRNA:   3'- -GCUAGuCGCAGCGUCGcaaGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 32217 0.7 0.548139
Target:  5'- aGAUCAGCGUguaaagcUGCAGCGgguugUUCGCcuGCa -3'
miRNA:   3'- gCUAGUCGCA-------GCGUCGC-----AAGCGcuUG- -5'
24233 5' -53.8 NC_005263.2 + 19867 0.68 0.671618
Target:  5'- aGGUCacGGCGagCGCGGCGagCGCGGc- -3'
miRNA:   3'- gCUAG--UCGCa-GCGUCGCaaGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 19743 0.67 0.682724
Target:  5'- gCGAUCGGCGcuggcgcgcUgGCGGCGcUCGUGGc- -3'
miRNA:   3'- -GCUAGUCGC---------AgCGUCGCaAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 28964 0.73 0.352654
Target:  5'- gGAUCGGUGUCGCggaauucgGGCGcaugcugcugccagaUCGCGAGCa -3'
miRNA:   3'- gCUAGUCGCAGCG--------UCGCa--------------AGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 26218 0.7 0.537252
Target:  5'- ---gCGGCGUCGUcaacucggucgauAGCGUcuugccggccgUCGCGAACg -3'
miRNA:   3'- gcuaGUCGCAGCG-------------UCGCA-----------AGCGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.