miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24233 5' -53.8 NC_005263.2 + 2852 1.1 0.000986
Target:  5'- uCGAUCAGCGUCGCAGCGUUCGCGAACg -3'
miRNA:   3'- -GCUAGUCGCAGCGUCGCAAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 21852 0.81 0.117073
Target:  5'- uGAUCAG-GUCGCcGCGUUCGCGAc- -3'
miRNA:   3'- gCUAGUCgCAGCGuCGCAAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 34578 0.78 0.182398
Target:  5'- aCGGUCAGCGUCGCuugauuacUCGCGGACg -3'
miRNA:   3'- -GCUAGUCGCAGCGucgca---AGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 32320 0.75 0.280853
Target:  5'- aCGAgCAGCG-CGCAGUGgUCGuCGAGCa -3'
miRNA:   3'- -GCUaGUCGCaGCGUCGCaAGC-GCUUG- -5'
24233 5' -53.8 NC_005263.2 + 26186 0.74 0.318778
Target:  5'- aCGGUCuGCGgccgCGCGGCGgccgCGCGAuGCg -3'
miRNA:   3'- -GCUAGuCGCa---GCGUCGCaa--GCGCU-UG- -5'
24233 5' -53.8 NC_005263.2 + 24137 0.73 0.343321
Target:  5'- cCGAUUuGCGUCGCGGU---UGCGAACg -3'
miRNA:   3'- -GCUAGuCGCAGCGUCGcaaGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 27338 0.73 0.343321
Target:  5'- aCGAUCAGCGgCGCGGCcauGUUacaggccgccaGCGAGCg -3'
miRNA:   3'- -GCUAGUCGCaGCGUCG---CAAg----------CGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 28964 0.73 0.352654
Target:  5'- gGAUCGGUGUCGCggaauucgGGCGcaugcugcugccagaUCGCGAGCa -3'
miRNA:   3'- gCUAGUCGCAGCG--------UCGCa--------------AGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 17151 0.73 0.369195
Target:  5'- gCGGUCGaCGUCGCGGUGUUCgGCuGGCa -3'
miRNA:   3'- -GCUAGUcGCAGCGUCGCAAG-CGcUUG- -5'
24233 5' -53.8 NC_005263.2 + 3568 0.73 0.378112
Target:  5'- ----aAGCGUCGCGGCGUacuccuugaucuUCGCGAc- -3'
miRNA:   3'- gcuagUCGCAGCGUCGCA------------AGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 27403 0.73 0.387172
Target:  5'- cCGGccugCAGCGUCGUAGCGagugcugUCGCGucGCg -3'
miRNA:   3'- -GCUa---GUCGCAGCGUCGCa------AGCGCu-UG- -5'
24233 5' -53.8 NC_005263.2 + 5426 0.72 0.396374
Target:  5'- gCGG-CAGCGUCGUuagcaucuGCGaaCGCGAACa -3'
miRNA:   3'- -GCUaGUCGCAGCGu-------CGCaaGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 22527 0.72 0.405716
Target:  5'- gCGAUCAGCGUgaCG-GGCGg-CGCGGACg -3'
miRNA:   3'- -GCUAGUCGCA--GCgUCGCaaGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 29958 0.72 0.415195
Target:  5'- aGAUCGGCcugCGCAGCGgcgggcagCGCGAucaGCg -3'
miRNA:   3'- gCUAGUCGca-GCGUCGCaa------GCGCU---UG- -5'
24233 5' -53.8 NC_005263.2 + 3479 0.72 0.419024
Target:  5'- uCGAUCAGCuGcCGCAGCGagucgggcaaguugUCGCGcGCg -3'
miRNA:   3'- -GCUAGUCG-CaGCGUCGCa-------------AGCGCuUG- -5'
24233 5' -53.8 NC_005263.2 + 26769 0.72 0.428691
Target:  5'- --uUCAGCGcgcUCGCgaacaucagaccgacGGCGUUCGUGAACc -3'
miRNA:   3'- gcuAGUCGC---AGCG---------------UCGCAAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 10163 0.72 0.434554
Target:  5'- aGcUUGGCGUCGCcgagAGCGcgaaUCGCGAGCa -3'
miRNA:   3'- gCuAGUCGCAGCG----UCGCa---AGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 30358 0.71 0.444427
Target:  5'- cCGAUCAGguCGUCguGCAGCGcUUCGgGGAUg -3'
miRNA:   3'- -GCUAGUC--GCAG--CGUCGC-AAGCgCUUG- -5'
24233 5' -53.8 NC_005263.2 + 30445 0.71 0.464544
Target:  5'- gCGAgCAGCGUgagCGCGGCGgccuUCGCGuuGCg -3'
miRNA:   3'- -GCUaGUCGCA---GCGUCGCa---AGCGCu-UG- -5'
24233 5' -53.8 NC_005263.2 + 9876 0.7 0.506132
Target:  5'- uCGAUCAGCc-CGCagagcuucucGGCGgccaUCGCGAGCg -3'
miRNA:   3'- -GCUAGUCGcaGCG----------UCGCa---AGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.