Results 1 - 20 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 10401 | 0.66 | 0.36254 |
Target: 5'- --gGCCGGCGagcggGUCCGgCGCG-CGUu -3' miRNA: 3'- gagCGGCCGCg----UAGGCgGCGCuGCAu -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 28242 | 0.66 | 0.330427 |
Target: 5'- gCUCGCC-GCGC--UCGCCGUGACc-- -3' miRNA: 3'- -GAGCGGcCGCGuaGGCGGCGCUGcau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 14156 | 0.66 | 0.330427 |
Target: 5'- aCUCGCCGGCccGCAguugUCGCCGUucuauGCGa- -3' miRNA: 3'- -GAGCGGCCG--CGUa---GGCGGCGc----UGCau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 27414 | 0.66 | 0.315174 |
Target: 5'- -aCGaCCGGCGCAgguuucgcgCCGCCGaacacgcuuuCGACGg- -3' miRNA: 3'- gaGC-GGCCGCGUa--------GGCGGC----------GCUGCau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 26305 | 0.66 | 0.315174 |
Target: 5'- gCUCGCCGGC-CAgcugCagGCCGguCGGCGUGa -3' miRNA: 3'- -GAGCGGCCGcGUa---Gg-CGGC--GCUGCAU- -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 38648 | 0.66 | 0.315174 |
Target: 5'- --aGCCgGGCGCG-CCGCUGCccGugGUGc -3' miRNA: 3'- gagCGG-CCGCGUaGGCGGCG--CugCAU- -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 18592 | 0.66 | 0.315174 |
Target: 5'- -cUGCUGGCGCGccgacggacgCCGCaGCGGCGUu -3' miRNA: 3'- gaGCGGCCGCGUa---------GGCGgCGCUGCAu -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 46925 | 0.66 | 0.318181 |
Target: 5'- -gCGCUGccGCGCAgcacgaggcacaagUCGCCGCGACGg- -3' miRNA: 3'- gaGCGGC--CGCGUa-------------GGCGGCGCUGCau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 31722 | 0.66 | 0.330427 |
Target: 5'- -aUGCCGGCcagcuucaucagGCcgCCGCCgaGCGACGc- -3' miRNA: 3'- gaGCGGCCG------------CGuaGGCGG--CGCUGCau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 26987 | 0.66 | 0.338254 |
Target: 5'- -gCGCCGaGCaGCAcCCGCUGCGcCGg- -3' miRNA: 3'- gaGCGGC-CG-CGUaGGCGGCGCuGCau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 975 | 0.66 | 0.338254 |
Target: 5'- gUCGCCuGCGCGUCggacggCGCUucguuucaucggGCGGCGUGu -3' miRNA: 3'- gAGCGGcCGCGUAG------GCGG------------CGCUGCAU- -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 16597 | 0.66 | 0.345414 |
Target: 5'- uUCGCCGGgcuCGCGcgcgagcagcagcUCgCGCCGCuGACGg- -3' miRNA: 3'- gAGCGGCC---GCGU-------------AG-GCGGCG-CUGCau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 3344 | 0.66 | 0.354312 |
Target: 5'- -cCGCCGGCGCcgCgCGCggucgaGCGACc-- -3' miRNA: 3'- gaGCGGCCGCGuaG-GCGg-----CGCUGcau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 45419 | 0.66 | 0.354312 |
Target: 5'- -cUGUCGGcCGCcgCCGgCGCGACa-- -3' miRNA: 3'- gaGCGGCC-GCGuaGGCgGCGCUGcau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 22379 | 0.66 | 0.354312 |
Target: 5'- gUCGaUCGGCgGCAUCgggcagGCCGCGaACGUAc -3' miRNA: 3'- gAGC-GGCCG-CGUAGg-----CGGCGC-UGCAU- -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 46977 | 0.66 | 0.353496 |
Target: 5'- -aCGCCGuGCGCAgcacggcgcggacUUCGCgCGCGACu-- -3' miRNA: 3'- gaGCGGC-CGCGU-------------AGGCG-GCGCUGcau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 10846 | 0.66 | 0.346217 |
Target: 5'- uUCGuuGGUGCGggcuacggCGUCGCGGCGg- -3' miRNA: 3'- gAGCggCCGCGUag------GCGGCGCUGCau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 41497 | 0.66 | 0.346217 |
Target: 5'- -gCGCCGaGCGCG-CCGCCGaacGCGa- -3' miRNA: 3'- gaGCGGC-CGCGUaGGCGGCgc-UGCau -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 38918 | 0.66 | 0.346217 |
Target: 5'- --aGCCGGCGCcg-CGCCGagcuCGACGUc -3' miRNA: 3'- gagCGGCCGCGuagGCGGC----GCUGCAu -5' |
|||||||
24234 | 3' | -62.1 | NC_005263.2 | + | 2160 | 0.66 | 0.346217 |
Target: 5'- -gCGCCuGGCGCugAUCCGgCGCGAg--- -3' miRNA: 3'- gaGCGG-CCGCG--UAGGCgGCGCUgcau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home