miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24234 3' -62.1 NC_005263.2 + 423 0.69 0.217631
Target:  5'- gCUUGCCGcacaGCAcgaggaUCGCCGCGACGUAa -3'
miRNA:   3'- -GAGCGGCcg--CGUa-----GGCGGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 710 0.66 0.346217
Target:  5'- -cCGCCGccCGCGagCGCCGUGGCGa- -3'
miRNA:   3'- gaGCGGCc-GCGUagGCGGCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 881 0.67 0.279391
Target:  5'- --gGCCGGCGC-UUCGUucagCGCGGCGg- -3'
miRNA:   3'- gagCGGCCGCGuAGGCG----GCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 975 0.66 0.338254
Target:  5'- gUCGCCuGCGCGUCggacggCGCUucguuucaucggGCGGCGUGu -3'
miRNA:   3'- gAGCGGcCGCGUAG------GCGG------------CGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 1417 0.69 0.217631
Target:  5'- gUCGUCGGCGCGcgCCGCCuuGGCu-- -3'
miRNA:   3'- gAGCGGCCGCGUa-GGCGGcgCUGcau -5'
24234 3' -62.1 NC_005263.2 + 2160 0.66 0.346217
Target:  5'- -gCGCCuGGCGCugAUCCGgCGCGAg--- -3'
miRNA:   3'- gaGCGG-CCGCG--UAGGCgGCGCUgcau -5'
24234 3' -62.1 NC_005263.2 + 2398 0.7 0.172399
Target:  5'- --gGCCGGgGCAccacgcUUCGCCGCGACa-- -3'
miRNA:   3'- gagCGGCCgCGU------AGGCGGCGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 2650 0.79 0.038967
Target:  5'- gCUUGCCGGCGUAUCgGCgGCGACa-- -3'
miRNA:   3'- -GAGCGGCCGCGUAGgCGgCGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 3000 1.06 0.00031
Target:  5'- gCUCGCCGGCGCAUCCGCCGCGACGUAg -3'
miRNA:   3'- -GAGCGGCCGCGUAGGCGGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 3344 0.66 0.354312
Target:  5'- -cCGCCGGCGCcgCgCGCggucgaGCGACc-- -3'
miRNA:   3'- gaGCGGCCGCGuaG-GCGg-----CGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 3543 0.72 0.123201
Target:  5'- --gGCCGGCGuCGUCCauguccucgccaagcGUCGCGGCGUAc -3'
miRNA:   3'- gagCGGCCGC-GUAGG---------------CGGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 4242 0.67 0.293302
Target:  5'- -aCGUCGGCGuCAggaUGCCGCGcACGUu -3'
miRNA:   3'- gaGCGGCCGC-GUag-GCGGCGC-UGCAu -5'
24234 3' -62.1 NC_005263.2 + 5594 0.66 0.36254
Target:  5'- -cCGUCGG-GCAUCCGCacgGCGAggcCGUGc -3'
miRNA:   3'- gaGCGGCCgCGUAGGCGg--CGCU---GCAU- -5'
24234 3' -62.1 NC_005263.2 + 9335 0.7 0.191367
Target:  5'- gUCGCCGGCaaugccuuGCG-CCGgCGUGAUGUAa -3'
miRNA:   3'- gAGCGGCCG--------CGUaGGCgGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 9492 0.68 0.253151
Target:  5'- -gCGCCGGCGCuAUCCaUCGCGuGCGc- -3'
miRNA:   3'- gaGCGGCCGCG-UAGGcGGCGC-UGCau -5'
24234 3' -62.1 NC_005263.2 + 9693 0.74 0.087788
Target:  5'- -aCGCCGGCGCAcCCGaCgCGCGACaGUGc -3'
miRNA:   3'- gaGCGGCCGCGUaGGC-G-GCGCUG-CAU- -5'
24234 3' -62.1 NC_005263.2 + 10401 0.66 0.36254
Target:  5'- --gGCCGGCGagcggGUCCGgCGCG-CGUu -3'
miRNA:   3'- gagCGGCCGCg----UAGGCgGCGCuGCAu -5'
24234 3' -62.1 NC_005263.2 + 10555 0.7 0.196387
Target:  5'- gUUGUCGGC-CGUCUG-CGCGACGUGc -3'
miRNA:   3'- gAGCGGCCGcGUAGGCgGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 10846 0.66 0.346217
Target:  5'- uUCGuuGGUGCGggcuacggCGUCGCGGCGg- -3'
miRNA:   3'- gAGCggCCGCGUag------GCGGCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 10878 0.68 0.234827
Target:  5'- aCUCGgcaCCGGCGCGcgUCGUgaGCGGCGUAu -3'
miRNA:   3'- -GAGC---GGCCGCGUa-GGCGg-CGCUGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.