miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24234 3' -62.1 NC_005263.2 + 3000 1.06 0.00031
Target:  5'- gCUCGCCGGCGCAUCCGCCGCGACGUAg -3'
miRNA:   3'- -GAGCGGCCGCGUAGGCGGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 37443 0.69 0.228972
Target:  5'- -aCGUCGGCGCgcgcgGUCUG-CGCGGCGUc -3'
miRNA:   3'- gaGCGGCCGCG-----UAGGCgGCGCUGCAu -5'
24234 3' -62.1 NC_005263.2 + 12701 0.68 0.246916
Target:  5'- gCUUGCCGGCGUAggggCCGUC-CGGCu-- -3'
miRNA:   3'- -GAGCGGCCGCGUa---GGCGGcGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 31611 0.66 0.36254
Target:  5'- -aUGCCGGuCGCGaCgGCCGCG-CGg- -3'
miRNA:   3'- gaGCGGCC-GCGUaGgCGGCGCuGCau -5'
24234 3' -62.1 NC_005263.2 + 19171 0.76 0.061159
Target:  5'- -cCGCCGGCGCggcucGUCgGCCGCG-CGUGg -3'
miRNA:   3'- gaGCGGCCGCG-----UAGgCGGCGCuGCAU- -5'
24234 3' -62.1 NC_005263.2 + 20789 0.74 0.087788
Target:  5'- aUCGUCGGCGCGUCgGgUCGCGcCGUGg -3'
miRNA:   3'- gAGCGGCCGCGUAGgC-GGCGCuGCAU- -5'
24234 3' -62.1 NC_005263.2 + 47291 0.71 0.155127
Target:  5'- -gCGCCGaaGCGCAgUCCGCUGuCGACGg- -3'
miRNA:   3'- gaGCGGC--CGCGU-AGGCGGC-GCUGCau -5'
24234 3' -62.1 NC_005263.2 + 29435 0.71 0.163558
Target:  5'- --gGCCGGUagGCAUCCGCCauugcauCGGCGUAg -3'
miRNA:   3'- gagCGGCCG--CGUAGGCGGc------GCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 22198 0.7 0.18646
Target:  5'- -gUGCUGGCGUGgcccggggcauUUCGUCGCGACGUGc -3'
miRNA:   3'- gaGCGGCCGCGU-----------AGGCGGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 20734 0.69 0.22324
Target:  5'- -gCGCCGGC-CG-CCGCCGCGcCGc- -3'
miRNA:   3'- gaGCGGCCGcGUaGGCGGCGCuGCau -5'
24234 3' -62.1 NC_005263.2 + 10555 0.7 0.196387
Target:  5'- gUUGUCGGC-CGUCUG-CGCGACGUGc -3'
miRNA:   3'- gAGCGGCCGcGUAGGCgGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 29215 0.7 0.181664
Target:  5'- --gGCCGGCGCGuaUuuGCCGuCGGCGc- -3'
miRNA:   3'- gagCGGCCGCGU--AggCGGC-GCUGCau -5'
24234 3' -62.1 NC_005263.2 + 37239 0.82 0.024026
Target:  5'- -gCGCCGGUGCcgaguUCCGCCGCGACGc- -3'
miRNA:   3'- gaGCGGCCGCGu----AGGCGGCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 21908 0.7 0.196387
Target:  5'- -cCGCCGcaucGCGCggCCGCCGCG-CGg- -3'
miRNA:   3'- gaGCGGC----CGCGuaGGCGGCGCuGCau -5'
24234 3' -62.1 NC_005263.2 + 2650 0.79 0.038967
Target:  5'- gCUUGCCGGCGUAUCgGCgGCGACa-- -3'
miRNA:   3'- -GAGCGGCCGCGUAGgCGgCGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 22491 0.7 0.181664
Target:  5'- gUCGCCGGCGg--CgGCCGgCGGCGg- -3'
miRNA:   3'- gAGCGGCCGCguaGgCGGC-GCUGCau -5'
24234 3' -62.1 NC_005263.2 + 45690 0.69 0.212142
Target:  5'- aCUCGUCGaGCGgAUgUGUCGCGGCGa- -3'
miRNA:   3'- -GAGCGGC-CGCgUAgGCGGCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 37720 0.68 0.234827
Target:  5'- gCUCGCCGGC-CGgcCCGgCGCGugGc- -3'
miRNA:   3'- -GAGCGGCCGcGUa-GGCgGCGCugCau -5'
24234 3' -62.1 NC_005263.2 + 25894 0.78 0.04885
Target:  5'- -aCGCCGGCGa--CgGCCGCGACGUAc -3'
miRNA:   3'- gaGCGGCCGCguaGgCGGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 47212 0.72 0.128639
Target:  5'- -cCGCCGGCgGCGaCCGCCGCGcugaACGa- -3'
miRNA:   3'- gaGCGGCCG-CGUaGGCGGCGC----UGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.