miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24234 3' -62.1 NC_005263.2 + 3000 1.06 0.00031
Target:  5'- gCUCGCCGGCGCAUCCGCCGCGACGUAg -3'
miRNA:   3'- -GAGCGGCCGCGUAGGCGGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 37239 0.82 0.024026
Target:  5'- -gCGCCGGUGCcgaguUCCGCCGCGACGc- -3'
miRNA:   3'- gaGCGGCCGCGu----AGGCGGCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 2650 0.79 0.038967
Target:  5'- gCUUGCCGGCGUAUCgGCgGCGACa-- -3'
miRNA:   3'- -GAGCGGCCGCGUAGgCGgCGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 29458 0.79 0.04242
Target:  5'- uUCGCCGGCaGCGUaCCGCCaGCGGCGc- -3'
miRNA:   3'- gAGCGGCCG-CGUA-GGCGG-CGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 25894 0.78 0.04885
Target:  5'- -aCGCCGGCGa--CgGCCGCGACGUAc -3'
miRNA:   3'- gaGCGGCCGCguaGgCGGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 26925 0.77 0.056226
Target:  5'- -gCGCCGcGCGCGUCCGCguccgcccCGUGGCGUAg -3'
miRNA:   3'- gaGCGGC-CGCGUAGGCG--------GCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 19171 0.76 0.061159
Target:  5'- -cCGCCGGCGCggcucGUCgGCCGCG-CGUGg -3'
miRNA:   3'- gaGCGGCCGCG-----UAGgCGGCGCuGCAU- -5'
24234 3' -62.1 NC_005263.2 + 16781 0.76 0.072309
Target:  5'- -cCGCCGGCGUAU-CGCCG-GACGUGa -3'
miRNA:   3'- gaGCGGCCGCGUAgGCGGCgCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 9693 0.74 0.087788
Target:  5'- -aCGCCGGCGCAcCCGaCgCGCGACaGUGc -3'
miRNA:   3'- gaGCGGCCGCGUaGGC-G-GCGCUG-CAU- -5'
24234 3' -62.1 NC_005263.2 + 39339 0.74 0.087788
Target:  5'- --gGCCGGCGuCAUCCuGCCGCGcaGCGUu -3'
miRNA:   3'- gagCGGCCGC-GUAGG-CGGCGC--UGCAu -5'
24234 3' -62.1 NC_005263.2 + 20789 0.74 0.087788
Target:  5'- aUCGUCGGCGCGUCgGgUCGCGcCGUGg -3'
miRNA:   3'- gAGCGGCCGCGUAGgC-GGCGCuGCAU- -5'
24234 3' -62.1 NC_005263.2 + 24797 0.74 0.092762
Target:  5'- gCUCGCCGG-GCGUCgGCgGCG-CGUAu -3'
miRNA:   3'- -GAGCGGCCgCGUAGgCGgCGCuGCAU- -5'
24234 3' -62.1 NC_005263.2 + 24283 0.73 0.118619
Target:  5'- -aCGaCCGGCGCuUUCGCgGCGACGa- -3'
miRNA:   3'- gaGC-GGCCGCGuAGGCGgCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 3543 0.72 0.123201
Target:  5'- --gGCCGGCGuCGUCCauguccucgccaagcGUCGCGGCGUAc -3'
miRNA:   3'- gagCGGCCGC-GUAGG---------------CGGCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 47212 0.72 0.128639
Target:  5'- -cCGCCGGCgGCGaCCGCCGCGcugaACGa- -3'
miRNA:   3'- gaGCGGCCG-CGUaGGCGGCGC----UGCau -5'
24234 3' -62.1 NC_005263.2 + 36007 0.72 0.13215
Target:  5'- -gCGCCGcuGCGCAUgCCagGCCGCGACGa- -3'
miRNA:   3'- gaGCGGC--CGCGUA-GG--CGGCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 41549 0.72 0.135749
Target:  5'- -aCGCgCGGCGCG-CCGUgGCGGCGa- -3'
miRNA:   3'- gaGCG-GCCGCGUaGGCGgCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 35557 0.71 0.147092
Target:  5'- -gCGCuaCGGCGCcgccggCCGCCGCGaACGUGa -3'
miRNA:   3'- gaGCG--GCCGCGua----GGCGGCGC-UGCAU- -5'
24234 3' -62.1 NC_005263.2 + 47291 0.71 0.155127
Target:  5'- -gCGCCGaaGCGCAgUCCGCUGuCGACGg- -3'
miRNA:   3'- gaGCGGC--CGCGU-AGGCGGC-GCUGCau -5'
24234 3' -62.1 NC_005263.2 + 17392 0.71 0.159293
Target:  5'- -cUGCCGGCGCggCCGCgCGCcuGGCGg- -3'
miRNA:   3'- gaGCGGCCGCGuaGGCG-GCG--CUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.