miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24235 5' -66 NC_005263.2 + 36858 0.66 0.252815
Target:  5'- uCGCaCGCCCGgCggUCGAgaauucGAC-CCGGGCg -3'
miRNA:   3'- -GCG-GCGGGCgG--GGCUa-----CUGcGGCCCG- -5'
24235 5' -66 NC_005263.2 + 26648 0.66 0.235142
Target:  5'- aGUgGCgCCGCagCGGUGGCGCuuccggauuCGGGCa -3'
miRNA:   3'- gCGgCG-GGCGggGCUACUGCG---------GCCCG- -5'
24235 5' -66 NC_005263.2 + 20776 0.66 0.235142
Target:  5'- gGCCGCgCCGCUgaUCGucgGcGCGUCGGGUc -3'
miRNA:   3'- gCGGCG-GGCGG--GGCua-C-UGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 40196 0.66 0.252815
Target:  5'- gCGUCGUCCaCUCCGAUGcggaaGCaUGGGCg -3'
miRNA:   3'- -GCGGCGGGcGGGGCUACug---CG-GCCCG- -5'
24235 5' -66 NC_005263.2 + 20319 0.66 0.223944
Target:  5'- gGCCG-CCGUCCCGAcGAucacCGCUGucGGCa -3'
miRNA:   3'- gCGGCgGGCGGGGCUaCU----GCGGC--CCG- -5'
24235 5' -66 NC_005263.2 + 23034 0.66 0.223944
Target:  5'- gCGCCaCCCGaauugCCGGUcGACGUCGGGa -3'
miRNA:   3'- -GCGGcGGGCgg---GGCUA-CUGCGGCCCg -5'
24235 5' -66 NC_005263.2 + 6111 0.66 0.229485
Target:  5'- gGCCGCUCGUCuuGAUcGGCcgguauGUCGGuGCg -3'
miRNA:   3'- gCGGCGGGCGGggCUA-CUG------CGGCC-CG- -5'
24235 5' -66 NC_005263.2 + 19673 0.66 0.235142
Target:  5'- aCGCCGCgCUGCCCgCGAcguucacgcgcgUGccgGCGCCuccggGGGUa -3'
miRNA:   3'- -GCGGCG-GGCGGG-GCU------------AC---UGCGG-----CCCG- -5'
24235 5' -66 NC_005263.2 + 42851 0.66 0.231734
Target:  5'- uGCCgGCaCCGCCCgcUGAUGACGgCGccugaucgcgucaauGGCg -3'
miRNA:   3'- gCGG-CG-GGCGGG--GCUACUGCgGC---------------CCG- -5'
24235 5' -66 NC_005263.2 + 6760 0.66 0.235142
Target:  5'- aGCCGCUgcgauCGUUucgagaucguaaUCGGUGACGCCggcGGGCg -3'
miRNA:   3'- gCGGCGG-----GCGG------------GGCUACUGCGG---CCCG- -5'
24235 5' -66 NC_005263.2 + 29541 0.66 0.223944
Target:  5'- gGCCGggaCGCCaCCGG---UGCCGGGCu -3'
miRNA:   3'- gCGGCgg-GCGG-GGCUacuGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 41321 0.66 0.227255
Target:  5'- aCGCCGCCCGCCggcgucaCCGAUuacgaucucgaaacGAuCGCaGcGGCu -3'
miRNA:   3'- -GCGGCGGGCGG-------GGCUA--------------CU-GCGgC-CCG- -5'
24235 5' -66 NC_005263.2 + 44881 0.66 0.252815
Target:  5'- uGCUGCCCGgCgucaUCGGggcgGGCggcgGCCGGGCc -3'
miRNA:   3'- gCGGCGGGCgG----GGCUa---CUG----CGGCCCG- -5'
24235 5' -66 NC_005263.2 + 18881 0.66 0.252815
Target:  5'- gCGCCGCUgCGCgCCGAcGgcaaauacGCGCCGGccuGCg -3'
miRNA:   3'- -GCGGCGG-GCGgGGCUaC--------UGCGGCC---CG- -5'
24235 5' -66 NC_005263.2 + 2859 0.66 0.252815
Target:  5'- gGCCgGCCCGCCCgccaguuguagaCGAucucgcUGACcuguUCGGGCg -3'
miRNA:   3'- gCGG-CGGGCGGG------------GCU------ACUGc---GGCCCG- -5'
24235 5' -66 NC_005263.2 + 32914 0.66 0.252815
Target:  5'- gGCgGCCCGCUgaccggcuuCCGAUcGAUGUCGG-Ca -3'
miRNA:   3'- gCGgCGGGCGG---------GGCUA-CUGCGGCCcG- -5'
24235 5' -66 NC_005263.2 + 12650 0.66 0.243257
Target:  5'- uCGgCGCCCGCUgucaacgcuaccgcgUCGAUGucaACGCCGG-Ca -3'
miRNA:   3'- -GCgGCGGGCGG---------------GGCUAC---UGCGGCCcG- -5'
24235 5' -66 NC_005263.2 + 12852 0.66 0.235142
Target:  5'- gGCaGCCCGUaUUCGAUGGgGCCGGcGUg -3'
miRNA:   3'- gCGgCGGGCG-GGGCUACUgCGGCC-CG- -5'
24235 5' -66 NC_005263.2 + 23278 0.66 0.229485
Target:  5'- aCGCCGUggaaGCCCUGGggacaGGCGCCGuuuuacGGCg -3'
miRNA:   3'- -GCGGCGgg--CGGGGCUa----CUGCGGC------CCG- -5'
24235 5' -66 NC_005263.2 + 25607 0.66 0.229485
Target:  5'- aGCCGCCgaacCGCCgCCGGc--CGCCGccGGCg -3'
miRNA:   3'- gCGGCGG----GCGG-GGCUacuGCGGC--CCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.