miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24235 5' -66 NC_005263.2 + 3220 1.1 0.000076
Target:  5'- gCGCCGCCCGCCCCGAUGACGCCGGGCa -3'
miRNA:   3'- -GCGGCGGGCGGGGCUACUGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 35526 0.77 0.0326
Target:  5'- gCGCCGaCUGCgCCCGgcGGCGCgCGGGCg -3'
miRNA:   3'- -GCGGCgGGCG-GGGCuaCUGCG-GCCCG- -5'
24235 5' -66 NC_005263.2 + 26925 0.76 0.042851
Target:  5'- gCGCCGCgcgcguccgcguCCGCCCCG-UGGCguagccGCCGGGUg -3'
miRNA:   3'- -GCGGCG------------GGCGGGGCuACUG------CGGCCCG- -5'
24235 5' -66 NC_005263.2 + 12563 0.76 0.044035
Target:  5'- gCGCCguagcGCCCGCCCgCGcgc-CGCCGGGCg -3'
miRNA:   3'- -GCGG-----CGGGCGGG-GCuacuGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 708 0.75 0.054729
Target:  5'- uGCCG-CCGCCCgCGA--GCGCCGuGGCg -3'
miRNA:   3'- gCGGCgGGCGGG-GCUacUGCGGC-CCG- -5'
24235 5' -66 NC_005263.2 + 19116 0.74 0.056231
Target:  5'- gGUCGgCCGCgCCGAgcgcauCGCCGGGCg -3'
miRNA:   3'- gCGGCgGGCGgGGCUacu---GCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 20164 0.74 0.064364
Target:  5'- gCGCCGUCCGgCUcaucgacgaCGAgcGCGCCGGGCg -3'
miRNA:   3'- -GCGGCGGGCgGG---------GCUacUGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 38659 0.73 0.073626
Target:  5'- cCGCUGCCCGUggugCCCGucuUGAUcgGCCcGGGCg -3'
miRNA:   3'- -GCGGCGGGCG----GGGCu--ACUG--CGG-CCCG- -5'
24235 5' -66 NC_005263.2 + 17469 0.73 0.075424
Target:  5'- aGCCGCCuguacgucaugaaCGCCCUGAUcGCGCgCGGcGCg -3'
miRNA:   3'- gCGGCGG-------------GCGGGGCUAcUGCG-GCC-CG- -5'
24235 5' -66 NC_005263.2 + 24799 0.72 0.081944
Target:  5'- uGCCGCCCGCCuggccgCCGuaaaacGGCGCCuguccccaGGGCu -3'
miRNA:   3'- gCGGCGGGCGG------GGCua----CUGCGG--------CCCG- -5'
24235 5' -66 NC_005263.2 + 23568 0.72 0.083266
Target:  5'- cCGCCGCCCGCgccgccgccguugCCCGAuacguaaaucgucgUGACGUUcGGCg -3'
miRNA:   3'- -GCGGCGGGCG-------------GGGCU--------------ACUGCGGcCCG- -5'
24235 5' -66 NC_005263.2 + 25582 0.72 0.086202
Target:  5'- gCGCCGCCCGUCaCGcUGaucgcaacggaguGCGCCGGGa -3'
miRNA:   3'- -GCGGCGGGCGGgGCuAC-------------UGCGGCCCg -5'
24235 5' -66 NC_005263.2 + 24023 0.71 0.093606
Target:  5'- cCGCCGCCgGCCggaUCGGUcGACGuguCCGGGUu -3'
miRNA:   3'- -GCGGCGGgCGG---GGCUA-CUGC---GGCCCG- -5'
24235 5' -66 NC_005263.2 + 11229 0.71 0.096121
Target:  5'- uCGCCaaGCgCGCCCgGGUcgaauucucGAcCGCCGGGCg -3'
miRNA:   3'- -GCGG--CGgGCGGGgCUA---------CU-GCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 19038 0.71 0.096121
Target:  5'- gGCCGaugcgcgCCGCCCCGAggacGCGCCGcGCg -3'
miRNA:   3'- gCGGCg------GGCGGGGCUac--UGCGGCcCG- -5'
24235 5' -66 NC_005263.2 + 8039 0.71 0.109678
Target:  5'- aGgCGUCCGCgCCG-UGGCGCCGcGCg -3'
miRNA:   3'- gCgGCGGGCGgGGCuACUGCGGCcCG- -5'
24235 5' -66 NC_005263.2 + 12716 0.7 0.112301
Target:  5'- gGCCGUCCGgCUCGGUGuucagccGCGCCgccaccugaucaGGGCg -3'
miRNA:   3'- gCGGCGGGCgGGGCUAC-------UGCGG------------CCCG- -5'
24235 5' -66 NC_005263.2 + 26984 0.7 0.112596
Target:  5'- uGCgCGCCgagcaGCaCCCGcUG-CGCCGGGCu -3'
miRNA:   3'- gCG-GCGGg----CG-GGGCuACuGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 40837 0.7 0.118652
Target:  5'- cCGCCGCUCGUCCCGAccgacaucguUGACgGUCGaGaGCc -3'
miRNA:   3'- -GCGGCGGGCGGGGCU----------ACUG-CGGC-C-CG- -5'
24235 5' -66 NC_005263.2 + 46887 0.7 0.121475
Target:  5'- uCG-CGCUCGuCCCCGAugcgaucUGACGCCGGa- -3'
miRNA:   3'- -GCgGCGGGC-GGGGCU-------ACUGCGGCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.