miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24235 5' -66 NC_005263.2 + 538 0.69 0.146024
Target:  5'- gCGCCGCCCGCa--GGUGGCGCau-GCu -3'
miRNA:   3'- -GCGGCGGGCGgggCUACUGCGgccCG- -5'
24235 5' -66 NC_005263.2 + 708 0.75 0.054729
Target:  5'- uGCCG-CCGCCCgCGA--GCGCCGuGGCg -3'
miRNA:   3'- gCGGCgGGCGGG-GCUacUGCGGC-CCG- -5'
24235 5' -66 NC_005263.2 + 852 0.66 0.240915
Target:  5'- uGCUGCCCuguGCCauaggcacgCUGAcGACGCCGuuGGCg -3'
miRNA:   3'- gCGGCGGG---CGG---------GGCUaCUGCGGC--CCG- -5'
24235 5' -66 NC_005263.2 + 1938 0.69 0.146024
Target:  5'- aGCgCGCCgGCaCCGgcGACGCCGG-Ca -3'
miRNA:   3'- gCG-GCGGgCGgGGCuaCUGCGGCCcG- -5'
24235 5' -66 NC_005263.2 + 2859 0.66 0.252815
Target:  5'- gGCCgGCCCGCCCgccaguuguagaCGAucucgcUGACcuguUCGGGCg -3'
miRNA:   3'- gCGG-CGGGCGGG------------GCU------ACUGc---GGCCCG- -5'
24235 5' -66 NC_005263.2 + 3220 1.1 0.000076
Target:  5'- gCGCCGCCCGCCCCGAUGACGCCGGGCa -3'
miRNA:   3'- -GCGGCGGGCGGGGCUACUGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 6111 0.66 0.229485
Target:  5'- gGCCGCUCGUCuuGAUcGGCcgguauGUCGGuGCg -3'
miRNA:   3'- gCGGCGGGCGGggCUA-CUG------CGGCC-CG- -5'
24235 5' -66 NC_005263.2 + 6337 0.68 0.1577
Target:  5'- aGUCGCCCGCgCCGAucuccucguUGaucGCGCCGuGCc -3'
miRNA:   3'- gCGGCGGGCGgGGCU---------AC---UGCGGCcCG- -5'
24235 5' -66 NC_005263.2 + 6747 0.67 0.197922
Target:  5'- uCGCgCGUCaCGUCCaucgcGCGCCGGGCg -3'
miRNA:   3'- -GCG-GCGG-GCGGGgcuacUGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 6760 0.66 0.235142
Target:  5'- aGCCGCUgcgauCGUUucgagaucguaaUCGGUGACGCCggcGGGCg -3'
miRNA:   3'- gCGGCGG-----GCGG------------GGCUACUGCGG---CCCG- -5'
24235 5' -66 NC_005263.2 + 6952 0.66 0.246806
Target:  5'- gGCCGCCCacGCCgCGcgaACGCCGGu- -3'
miRNA:   3'- gCGGCGGG--CGGgGCuacUGCGGCCcg -5'
24235 5' -66 NC_005263.2 + 8039 0.71 0.109678
Target:  5'- aGgCGUCCGCgCCG-UGGCGCCGcGCg -3'
miRNA:   3'- gCgGCGGGCGgGGCuACUGCGGCcCG- -5'
24235 5' -66 NC_005263.2 + 8766 0.69 0.153717
Target:  5'- aCGCUGCgCGgCagGAUGACGCCGGcccGCg -3'
miRNA:   3'- -GCGGCGgGCgGggCUACUGCGGCC---CG- -5'
24235 5' -66 NC_005263.2 + 9433 0.7 0.121793
Target:  5'- uGCCGCCCGggCCGAUcaaGACGggcaccaCGGGCa -3'
miRNA:   3'- gCGGCGGGCggGGCUA---CUGCg------GCCCG- -5'
24235 5' -66 NC_005263.2 + 10382 0.68 0.174577
Target:  5'- aGCCGCCaCGCgCCGGgccggccGGCGagCGGGUc -3'
miRNA:   3'- gCGGCGG-GCGgGGCUa------CUGCg-GCCCG- -5'
24235 5' -66 NC_005263.2 + 11229 0.71 0.096121
Target:  5'- uCGCCaaGCgCGCCCgGGUcgaauucucGAcCGCCGGGCg -3'
miRNA:   3'- -GCGG--CGgGCGGGgCUA---------CU-GCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 12563 0.76 0.044035
Target:  5'- gCGCCguagcGCCCGCCCgCGcgc-CGCCGGGCg -3'
miRNA:   3'- -GCGG-----CGGGCGGG-GCuacuGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 12650 0.66 0.243257
Target:  5'- uCGgCGCCCGCUgucaacgcuaccgcgUCGAUGucaACGCCGG-Ca -3'
miRNA:   3'- -GCgGCGGGCGG---------------GGCUAC---UGCGGCCcG- -5'
24235 5' -66 NC_005263.2 + 12716 0.7 0.112301
Target:  5'- gGCCGUCCGgCUCGGUGuucagccGCGCCgccaccugaucaGGGCg -3'
miRNA:   3'- gCGGCGGGCgGGGCUAC-------UGCGG------------CCCG- -5'
24235 5' -66 NC_005263.2 + 12852 0.66 0.235142
Target:  5'- gGCaGCCCGUaUUCGAUGGgGCCGGcGUg -3'
miRNA:   3'- gCGgCGGGCG-GGGCUACUgCGGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.