miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24235 5' -66 NC_005263.2 + 3220 1.1 0.000076
Target:  5'- gCGCCGCCCGCCCCGAUGACGCCGGGCa -3'
miRNA:   3'- -GCGGCGGGCGGGGCUACUGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 8766 0.69 0.153717
Target:  5'- aCGCUGCgCGgCagGAUGACGCCGGcccGCg -3'
miRNA:   3'- -GCGGCGgGCgGggCUACUGCGGCC---CG- -5'
24235 5' -66 NC_005263.2 + 44979 0.68 0.165525
Target:  5'- uGCUGaCCUGUCCgGGaucgaggcgcgcaUGGCGCCGuGGCu -3'
miRNA:   3'- gCGGC-GGGCGGGgCU-------------ACUGCGGC-CCG- -5'
24235 5' -66 NC_005263.2 + 40196 0.66 0.252815
Target:  5'- gCGUCGUCCaCUCCGAUGcggaaGCaUGGGCg -3'
miRNA:   3'- -GCGGCGGGcGGGGCUACug---CG-GCCCG- -5'
24235 5' -66 NC_005263.2 + 20164 0.74 0.064364
Target:  5'- gCGCCGUCCGgCUcaucgacgaCGAgcGCGCCGGGCg -3'
miRNA:   3'- -GCGGCGGGCgGG---------GCUacUGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 38659 0.73 0.073626
Target:  5'- cCGCUGCCCGUggugCCCGucuUGAUcgGCCcGGGCg -3'
miRNA:   3'- -GCGGCGGGCG----GGGCu--ACUG--CGG-CCCG- -5'
24235 5' -66 NC_005263.2 + 23568 0.72 0.083266
Target:  5'- cCGCCGCCCGCgccgccgccguugCCCGAuacguaaaucgucgUGACGUUcGGCg -3'
miRNA:   3'- -GCGGCGGGCG-------------GGGCU--------------ACUGCGGcCCG- -5'
24235 5' -66 NC_005263.2 + 25582 0.72 0.086202
Target:  5'- gCGCCGCCCGUCaCGcUGaucgcaacggaguGCGCCGGGa -3'
miRNA:   3'- -GCGGCGGGCGGgGCuAC-------------UGCGGCCCg -5'
24235 5' -66 NC_005263.2 + 12716 0.7 0.112301
Target:  5'- gGCCGUCCGgCUCGGUGuucagccGCGCCgccaccugaucaGGGCg -3'
miRNA:   3'- gCGGCGGGCgGGGCUAC-------UGCGG------------CCCG- -5'
24235 5' -66 NC_005263.2 + 1938 0.69 0.146024
Target:  5'- aGCgCGCCgGCaCCGgcGACGCCGG-Ca -3'
miRNA:   3'- gCG-GCGGgCGgGGCuaCUGCGGCCcG- -5'
24235 5' -66 NC_005263.2 + 18561 0.7 0.131684
Target:  5'- gCGCaGCCCGgCaCCGGUGGCGuCCcGGCc -3'
miRNA:   3'- -GCGgCGGGCgG-GGCUACUGC-GGcCCG- -5'
24235 5' -66 NC_005263.2 + 11229 0.71 0.096121
Target:  5'- uCGCCaaGCgCGCCCgGGUcgaauucucGAcCGCCGGGCg -3'
miRNA:   3'- -GCGG--CGgGCGGGgCUA---------CU-GCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 12563 0.76 0.044035
Target:  5'- gCGCCguagcGCCCGCCCgCGcgc-CGCCGGGCg -3'
miRNA:   3'- -GCGG-----CGGGCGGG-GCuacuGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 35252 0.69 0.135142
Target:  5'- aCGCCgGCCCcaucgaauacggGCugCCCGAUGGCGCCaagugcGGCg -3'
miRNA:   3'- -GCGG-CGGG------------CG--GGGCUACUGCGGc-----CCG- -5'
24235 5' -66 NC_005263.2 + 708 0.75 0.054729
Target:  5'- uGCCG-CCGCCCgCGA--GCGCCGuGGCg -3'
miRNA:   3'- gCGGCgGGCGGG-GCUacUGCGGC-CCG- -5'
24235 5' -66 NC_005263.2 + 24023 0.71 0.093606
Target:  5'- cCGCCGCCgGCCggaUCGGUcGACGuguCCGGGUu -3'
miRNA:   3'- -GCGGCGGgCGG---GGCUA-CUGC---GGCCCG- -5'
24235 5' -66 NC_005263.2 + 31539 0.69 0.138684
Target:  5'- uCGCCGCCgGCCuuGgcGuCGCUGcccaGGCg -3'
miRNA:   3'- -GCGGCGGgCGGggCuaCuGCGGC----CCG- -5'
24235 5' -66 NC_005263.2 + 31701 0.69 0.153717
Target:  5'- aCGCCGaguaCCGCaCCCGc-GAUGCCGGccaGCu -3'
miRNA:   3'- -GCGGCg---GGCG-GGGCuaCUGCGGCC---CG- -5'
24235 5' -66 NC_005263.2 + 19116 0.74 0.056231
Target:  5'- gGUCGgCCGCgCCGAgcgcauCGCCGGGCg -3'
miRNA:   3'- gCGGCgGGCGgGGCUacu---GCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 24799 0.72 0.081944
Target:  5'- uGCCGCCCGCCuggccgCCGuaaaacGGCGCCuguccccaGGGCu -3'
miRNA:   3'- gCGGCGGGCGG------GGCua----CUGCGG--------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.