miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 5' -54.6 NC_005263.2 + 47880 0.67 0.670017
Target:  5'- -cGAUCGCcuauagugGCUGCGUGCaGGUGUCGa- -3'
miRNA:   3'- caCUAGCG--------CGGCGCGUG-CUAUAGCac -5'
24238 5' -54.6 NC_005263.2 + 45315 0.69 0.54809
Target:  5'- aUGA-CGCGCUGCGCAauCGcuucacgGUCGUGa -3'
miRNA:   3'- cACUaGCGCGGCGCGU--GCua-----UAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 43822 0.68 0.569982
Target:  5'- -gGA-CGaGCCGgGCACGAUGuUCGUGu -3'
miRNA:   3'- caCUaGCgCGGCgCGUGCUAU-AGCAC- -5'
24238 5' -54.6 NC_005263.2 + 42128 0.7 0.463772
Target:  5'- --cGUCGUGCUGCGCgACGAgg-CGUGu -3'
miRNA:   3'- cacUAGCGCGGCGCG-UGCUauaGCAC- -5'
24238 5' -54.6 NC_005263.2 + 41501 0.68 0.614321
Target:  5'- -cGAgCGCGCCGCcgaaCGCGAUcgCGUc -3'
miRNA:   3'- caCUaGCGCGGCGc---GUGCUAuaGCAc -5'
24238 5' -54.6 NC_005263.2 + 41349 0.67 0.68109
Target:  5'- -cGAgcUCGC-CCgGCGCGCGAUGgaCGUGa -3'
miRNA:   3'- caCU--AGCGcGG-CGCGUGCUAUa-GCAC- -5'
24238 5' -54.6 NC_005263.2 + 39031 0.66 0.692115
Target:  5'- -cGGUCGCGCUGUucgGCACGGg--CGa- -3'
miRNA:   3'- caCUAGCGCGGCG---CGUGCUauaGCac -5'
24238 5' -54.6 NC_005263.2 + 38579 0.71 0.424212
Target:  5'- -cGGUCGCuGCCGCGCACGGc------ -3'
miRNA:   3'- caCUAGCG-CGGCGCGUGCUauagcac -5'
24238 5' -54.6 NC_005263.2 + 38267 0.67 0.647773
Target:  5'- -cGAgcaagCGCGCCGCGC-CGu--UCGUc -3'
miRNA:   3'- caCUa----GCGCGGCGCGuGCuauAGCAc -5'
24238 5' -54.6 NC_005263.2 + 37408 0.68 0.614321
Target:  5'- cGUGcAUCGCGUCGCGCGgcCGuccucGUCGUc -3'
miRNA:   3'- -CAC-UAGCGCGGCGCGU--GCua---UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 37356 0.69 0.54809
Target:  5'- -cGGUCGCgGCCGUGCuCGAUGcgcUCGa- -3'
miRNA:   3'- caCUAGCG-CGGCGCGuGCUAU---AGCac -5'
24238 5' -54.6 NC_005263.2 + 35636 0.66 0.724787
Target:  5'- ----gCGCGCCGC---CGGUAUCGUGu -3'
miRNA:   3'- cacuaGCGCGGCGcguGCUAUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 34821 0.66 0.692115
Target:  5'- cUGGcUGCGCaCGCGCcaguCGGUGUCGg- -3'
miRNA:   3'- cACUaGCGCG-GCGCGu---GCUAUAGCac -5'
24238 5' -54.6 NC_005263.2 + 33416 0.69 0.504121
Target:  5'- -cGAUCgccuugaGCGCCGCGCGCGcguagcgGUCGg- -3'
miRNA:   3'- caCUAG-------CGCGGCGCGUGCua-----UAGCac -5'
24238 5' -54.6 NC_005263.2 + 30618 0.75 0.234046
Target:  5'- -cGA-CGCGCCGCGCGCGAUcagggCGUu -3'
miRNA:   3'- caCUaGCGCGGCGCGUGCUAua---GCAc -5'
24238 5' -54.6 NC_005263.2 + 30285 0.68 0.592082
Target:  5'- --aAUCGgGCCGCGCGCGGcAUCc-- -3'
miRNA:   3'- cacUAGCgCGGCGCGUGCUaUAGcac -5'
24238 5' -54.6 NC_005263.2 + 29488 0.68 0.565585
Target:  5'- cUGGUCGgGCCGCuGCACGAacccgcgcauggcGUCGUu -3'
miRNA:   3'- cACUAGCgCGGCG-CGUGCUa------------UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 27240 0.77 0.178722
Target:  5'- cGUGAUCGCGCCGCcgGC-CGAUAgCGUu -3'
miRNA:   3'- -CACUAGCGCGGCG--CGuGCUAUaGCAc -5'
24238 5' -54.6 NC_005263.2 + 27135 0.67 0.68109
Target:  5'- -gGcgCGCaGCCGCGUcgGCGAUGUCc-- -3'
miRNA:   3'- caCuaGCG-CGGCGCG--UGCUAUAGcac -5'
24238 5' -54.6 NC_005263.2 + 26923 0.7 0.453698
Target:  5'- ----cCGCGCCGCGCGCGuccgCGUc -3'
miRNA:   3'- cacuaGCGCGGCGCGUGCuauaGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.