Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24238 | 5' | -54.6 | NC_005263.2 | + | 38579 | 0.71 | 0.424212 |
Target: 5'- -cGGUCGCuGCCGCGCACGGc------ -3' miRNA: 3'- caCUAGCG-CGGCGCGUGCUauagcac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 9784 | 0.68 | 0.592082 |
Target: 5'- -cGGUCGCG-CGCGCAuCGAUcucAUCGa- -3' miRNA: 3'- caCUAGCGCgGCGCGU-GCUA---UAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 43822 | 0.68 | 0.569982 |
Target: 5'- -gGA-CGaGCCGgGCACGAUGuUCGUGu -3' miRNA: 3'- caCUaGCgCGGCgCGUGCUAU-AGCAC- -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 17493 | 0.69 | 0.54809 |
Target: 5'- cUGAUCGCGCgCG-GCGCGucgAUCGa- -3' miRNA: 3'- cACUAGCGCG-GCgCGUGCua-UAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 45315 | 0.69 | 0.54809 |
Target: 5'- aUGA-CGCGCUGCGCAauCGcuucacgGUCGUGa -3' miRNA: 3'- cACUaGCGCGGCGCGU--GCua-----UAGCAC- -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 25730 | 0.69 | 0.505176 |
Target: 5'- cUGGcgcugCGCGCCGUGCACGAccUGUCc-- -3' miRNA: 3'- cACUa----GCGCGGCGCGUGCU--AUAGcac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 26923 | 0.7 | 0.453698 |
Target: 5'- ----cCGCGCCGCGCGCGuccgCGUc -3' miRNA: 3'- cacuaGCGCGGCGCGUGCuauaGCAc -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 19931 | 0.7 | 0.453698 |
Target: 5'- -aGAagGCGCCGCGCuauuCGAcGUCGg- -3' miRNA: 3'- caCUagCGCGGCGCGu---GCUaUAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 6360 | 0.7 | 0.453698 |
Target: 5'- uUGAUCGCGCCGUGCcgccCGAaGUUGc- -3' miRNA: 3'- cACUAGCGCGGCGCGu---GCUaUAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 18759 | 0.68 | 0.592082 |
Target: 5'- -cGAUCGUaggcggcgcgguGCuCGCGCugGuUAUCGUGc -3' miRNA: 3'- caCUAGCG------------CG-GCGCGugCuAUAGCAC- -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 3349 | 0.68 | 0.614321 |
Target: 5'- -----gGCGCCGCGCGCGG--UCGa- -3' miRNA: 3'- cacuagCGCGGCGCGUGCUauAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 41501 | 0.68 | 0.614321 |
Target: 5'- -cGAgCGCGCCGCcgaaCGCGAUcgCGUc -3' miRNA: 3'- caCUaGCGCGGCGc---GUGCUAuaGCAc -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 35636 | 0.66 | 0.724787 |
Target: 5'- ----gCGCGCCGC---CGGUAUCGUGu -3' miRNA: 3'- cacuaGCGCGGCGcguGCUAUAGCAC- -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 17401 | 0.66 | 0.703081 |
Target: 5'- -cGGccgCGCGCCugGCGgGCGGUGUCGc- -3' miRNA: 3'- caCUa--GCGCGG--CGCgUGCUAUAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 1560 | 0.66 | 0.703081 |
Target: 5'- -cGuUCGUGuuGCGCACGGUAUa--- -3' miRNA: 3'- caCuAGCGCggCGCGUGCUAUAgcac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 39031 | 0.66 | 0.692115 |
Target: 5'- -cGGUCGCGCUGUucgGCACGGg--CGa- -3' miRNA: 3'- caCUAGCGCGGCG---CGUGCUauaGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 34821 | 0.66 | 0.692115 |
Target: 5'- cUGGcUGCGCaCGCGCcaguCGGUGUCGg- -3' miRNA: 3'- cACUaGCGCG-GCGCGu---GCUAUAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 27135 | 0.67 | 0.68109 |
Target: 5'- -gGcgCGCaGCCGCGUcgGCGAUGUCc-- -3' miRNA: 3'- caCuaGCG-CGGCGCG--UGCUAUAGcac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 15180 | 0.67 | 0.636623 |
Target: 5'- aGUGAUCGacgcgaGCgCGcCGCGCGAcGUCGg- -3' miRNA: 3'- -CACUAGCg-----CG-GC-GCGUGCUaUAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 9617 | 0.67 | 0.625469 |
Target: 5'- --cAUCGCGUCGCGCcACGG-AUCGa- -3' miRNA: 3'- cacUAGCGCGGCGCG-UGCUaUAGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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