miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 8803 0.66 0.568272
Target:  5'- -gCGAUcGcGCGCGCAugcGCCUGCCgGCc -3'
miRNA:   3'- ugGCUA-CuUGCGCGU---UGGGCGGaCGu -5'
24244 3' -57.4 NC_005263.2 + 12555 0.66 0.568272
Target:  5'- gGCCGgcG-GCGcCGUAgcGCCCGCCcGCGc -3'
miRNA:   3'- -UGGCuaCuUGC-GCGU--UGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 23152 0.66 0.568272
Target:  5'- uGCCGAUcugcGAAcCGCGCA--CCGCCgUGCc -3'
miRNA:   3'- -UGGCUA----CUU-GCGCGUugGGCGG-ACGu -5'
24244 3' -57.4 NC_005263.2 + 23303 0.66 0.557428
Target:  5'- gGCCGAau-ACGCGCcGCCgaCGCCcgGCGa -3'
miRNA:   3'- -UGGCUacuUGCGCGuUGG--GCGGa-CGU- -5'
24244 3' -57.4 NC_005263.2 + 15214 0.66 0.557428
Target:  5'- cGCCGAcGccGACGCcacgaaacucGCcGCCCGCCgGCAc -3'
miRNA:   3'- -UGGCUaC--UUGCG----------CGuUGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 45698 0.66 0.557428
Target:  5'- aGCgGAUGugucgcggcgaAGCGUGguGCCCcgGCCUGCc -3'
miRNA:   3'- -UGgCUAC-----------UUGCGCguUGGG--CGGACGu -5'
24244 3' -57.4 NC_005263.2 + 6462 0.66 0.557428
Target:  5'- aGCaCGAgcGAGCGCGUGGgCCGCagUGCAa -3'
miRNA:   3'- -UG-GCUa-CUUGCGCGUUgGGCGg-ACGU- -5'
24244 3' -57.4 NC_005263.2 + 46485 0.66 0.546644
Target:  5'- cGCCGAc-GACGCGUucGACCCGgaUGCGg -3'
miRNA:   3'- -UGGCUacUUGCGCG--UUGGGCggACGU- -5'
24244 3' -57.4 NC_005263.2 + 30851 0.66 0.546644
Target:  5'- cGCCGAUGuuccGACGCgGCuggAACaCCGCgaGCAu -3'
miRNA:   3'- -UGGCUAC----UUGCG-CG---UUG-GGCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 35978 0.66 0.546644
Target:  5'- gACCGccugGAGCGCGCGuaauggcgcGCgCGCCgcUGCGc -3'
miRNA:   3'- -UGGCua--CUUGCGCGU---------UGgGCGG--ACGU- -5'
24244 3' -57.4 NC_005263.2 + 9442 0.66 0.540206
Target:  5'- gGCCGAUcaagacgggcaccacGGGCagcgGCGC-GCCCGgCUGCAg -3'
miRNA:   3'- -UGGCUA---------------CUUG----CGCGuUGGGCgGACGU- -5'
24244 3' -57.4 NC_005263.2 + 23893 0.66 0.535928
Target:  5'- -gCG-UGAGCGCGCucgugagcgcGCCCGCgaGCGu -3'
miRNA:   3'- ugGCuACUUGCGCGu---------UGGGCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 30333 0.66 0.53486
Target:  5'- gAUCGAUugcGAAuCGCGCGACuuGCCgaucaggucgucgUGCAg -3'
miRNA:   3'- -UGGCUA---CUU-GCGCGUUGggCGG-------------ACGU- -5'
24244 3' -57.4 NC_005263.2 + 29558 0.66 0.529533
Target:  5'- uGCCGGgcugcgcgaacuucuUGAACGCGCucgcggugucGACgCCGCCgaucGCGa -3'
miRNA:   3'- -UGGCU---------------ACUUGCGCG----------UUG-GGCGGa---CGU- -5'
24244 3' -57.4 NC_005263.2 + 23800 0.66 0.518939
Target:  5'- cGCCGAUGcGACGCGCGcgaGCcaaucgcucggguuuCCGCCUuccaccauGCAa -3'
miRNA:   3'- -UGGCUAC-UUGCGCGU---UG---------------GGCGGA--------CGU- -5'
24244 3' -57.4 NC_005263.2 + 48054 0.66 0.514724
Target:  5'- cACCuGGUacGAAgGCGC-GCCCGaCCUGCc -3'
miRNA:   3'- -UGG-CUA--CUUgCGCGuUGGGC-GGACGu -5'
24244 3' -57.4 NC_005263.2 + 31526 0.66 0.514724
Target:  5'- cCCGgcGAACGCGUcgccGCCgGCCUugGCGu -3'
miRNA:   3'- uGGCuaCUUGCGCGu---UGGgCGGA--CGU- -5'
24244 3' -57.4 NC_005263.2 + 26252 0.67 0.504251
Target:  5'- gGCCGucgcGAACGCgGCGACCUgaucaGCCUGa- -3'
miRNA:   3'- -UGGCua--CUUGCG-CGUUGGG-----CGGACgu -5'
24244 3' -57.4 NC_005263.2 + 27737 0.67 0.49387
Target:  5'- -aCGGUGucgGCGCGCGAUCaGCCaUGCGc -3'
miRNA:   3'- ugGCUACu--UGCGCGUUGGgCGG-ACGU- -5'
24244 3' -57.4 NC_005263.2 + 9175 0.67 0.492837
Target:  5'- aGCCGAUGcGCgacgucgagcucgGCGCGgcGCCCGgCUUGCu -3'
miRNA:   3'- -UGGCUACuUG-------------CGCGU--UGGGC-GGACGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.