miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24258 3' -58.1 NC_005263.2 + 45412 0.66 0.533798
Target:  5'- aCUcgGUCUG-UCGGCCGCcGCcGGCGc -3'
miRNA:   3'- cGAaaCGGACgAGCUGGCGaCG-CCGC- -5'
24258 3' -58.1 NC_005263.2 + 6653 0.66 0.523245
Target:  5'- ----cGCCUGCUCGAUCauaUGCGcGUGc -3'
miRNA:   3'- cgaaaCGGACGAGCUGGcg-ACGC-CGC- -5'
24258 3' -58.1 NC_005263.2 + 21408 0.66 0.50239
Target:  5'- gGCcg-GCCUGCUCGGCgcauuacgugCGCaucaauggGCGGCc -3'
miRNA:   3'- -CGaaaCGGACGAGCUG----------GCGa-------CGCCGc -5'
24258 3' -58.1 NC_005263.2 + 46161 0.66 0.50239
Target:  5'- cGCggUUGCCgGCgUCG-CCGgUGCcGGCGc -3'
miRNA:   3'- -CGa-AACGGaCG-AGCuGGCgACG-CCGC- -5'
24258 3' -58.1 NC_005263.2 + 29226 0.66 0.492099
Target:  5'- -aUUUGCCg--UCGGCgCGCaGCGGCGc -3'
miRNA:   3'- cgAAACGGacgAGCUG-GCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 14653 0.66 0.480893
Target:  5'- cGCUgaccgagUUGCCaGCgcucguggcCGACCGCUacgcgcgcGCGGCGc -3'
miRNA:   3'- -CGA-------AACGGaCGa--------GCUGGCGA--------CGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 12565 0.66 0.480893
Target:  5'- uGCgUUUGCgaacgugCUGC-CGAUCGCcgGCGGCa -3'
miRNA:   3'- -CG-AAACG-------GACGaGCUGGCGa-CGCCGc -5'
24258 3' -58.1 NC_005263.2 + 41480 0.67 0.461836
Target:  5'- cGCgcga-CUGCUCGACCGCgccgaGCGcGCc -3'
miRNA:   3'- -CGaaacgGACGAGCUGGCGa----CGC-CGc -5'
24258 3' -58.1 NC_005263.2 + 7673 0.67 0.457874
Target:  5'- cCUUUGCCcgucuucaaccggGUucgagUCGGCCGC-GCGGCGu -3'
miRNA:   3'- cGAAACGGa------------CG-----AGCUGGCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 2262 0.67 0.442214
Target:  5'- aGCgc-GCCgcgcGCUCGGCCaagGUUGCGGUc -3'
miRNA:   3'- -CGaaaCGGa---CGAGCUGG---CGACGCCGc -5'
24258 3' -58.1 NC_005263.2 + 26291 0.67 0.442214
Target:  5'- cGCgagaaugGCUUGCUCGccgGCCaGCUGCaGGCc -3'
miRNA:   3'- -CGaaa----CGGACGAGC---UGG-CGACG-CCGc -5'
24258 3' -58.1 NC_005263.2 + 12798 0.67 0.432581
Target:  5'- ----cGCCUGCUUGuACCggGCUuCGGCGa -3'
miRNA:   3'- cgaaaCGGACGAGC-UGG--CGAcGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 35834 0.67 0.423072
Target:  5'- cGCUUgUGcCCUGCaggUCGGCaaaaaacaacgGCUGCGGCa -3'
miRNA:   3'- -CGAA-AC-GGACG---AGCUGg----------CGACGCCGc -5'
24258 3' -58.1 NC_005263.2 + 31611 0.67 0.423072
Target:  5'- ---aUGCCggucGCgaCGGCCGC-GCGGCGc -3'
miRNA:   3'- cgaaACGGa---CGa-GCUGGCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 17204 0.68 0.412758
Target:  5'- ----cGCCgcGCUCGACucgugcaCGCUGCaGGCGa -3'
miRNA:   3'- cgaaaCGGa-CGAGCUG-------GCGACG-CCGC- -5'
24258 3' -58.1 NC_005263.2 + 18837 0.68 0.4109
Target:  5'- aGCUcaUUGCCgcGUUCGACCGCgUGaacaacgcgugccuCGGCGc -3'
miRNA:   3'- -CGA--AACGGa-CGAGCUGGCG-AC--------------GCCGC- -5'
24258 3' -58.1 NC_005263.2 + 41538 0.68 0.404436
Target:  5'- ----cGCCUGCgcaaacgcgCGGCgCGCcgugGCGGCGa -3'
miRNA:   3'- cgaaaCGGACGa--------GCUG-GCGa---CGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 36163 0.68 0.377475
Target:  5'- gGCgacgGCCUGCgCGACCGgUGCGa-- -3'
miRNA:   3'- -CGaaa-CGGACGaGCUGGCgACGCcgc -5'
24258 3' -58.1 NC_005263.2 + 47694 0.68 0.377475
Target:  5'- uGCUgUGCggcaagCUGCUCGGCaCGCUGaucauCGGCa -3'
miRNA:   3'- -CGAaACG------GACGAGCUG-GCGAC-----GCCGc -5'
24258 3' -58.1 NC_005263.2 + 4169 0.69 0.360185
Target:  5'- aGCgc-GCCgcGCUCGuGCUGCaGCGGCGu -3'
miRNA:   3'- -CGaaaCGGa-CGAGC-UGGCGaCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.