miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24260 3' -59.4 NC_005263.2 + 47290 0.7 0.256704
Target:  5'- cGCGCCGaa-GCGCaGUCCGcUGUCGACg -3'
miRNA:   3'- -CGCGGCcuaCGCG-CGGGCaGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 46875 0.7 0.283562
Target:  5'- -gGCCGGAUGacauCGCGCUCGUCccCGAUg -3'
miRNA:   3'- cgCGGCCUAC----GCGCGGGCAGcaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 46838 0.7 0.276645
Target:  5'- cGCGCCaGGcgGCGCGCCaaggagcaCGUCAu- -3'
miRNA:   3'- -CGCGG-CCuaCGCGCGGgca-----GCAGUug -5'
24260 3' -59.4 NC_005263.2 + 46175 0.68 0.368684
Target:  5'- uCGCCGGugccgGCGCGCUCGUgcagaCGcgCGGCu -3'
miRNA:   3'- cGCGGCCua---CGCGCGGGCA-----GCa-GUUG- -5'
24260 3' -59.4 NC_005263.2 + 45948 0.69 0.320195
Target:  5'- cGCGCCGGAUcaGCgccagGCGCUCGaaGUCAu- -3'
miRNA:   3'- -CGCGGCCUA--CG-----CGCGGGCagCAGUug -5'
24260 3' -59.4 NC_005263.2 + 45728 0.66 0.489627
Target:  5'- gGCGCCGucAUGgGUuacGCCgCGUCGaUCAACu -3'
miRNA:   3'- -CGCGGCc-UACgCG---CGG-GCAGC-AGUUG- -5'
24260 3' -59.4 NC_005263.2 + 44865 0.67 0.440741
Target:  5'- uGCGCgGcGAUcGCGCcuaccugucgucGCCCGagGUCGGCc -3'
miRNA:   3'- -CGCGgC-CUA-CGCG------------CGGGCagCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 44777 0.74 0.144383
Target:  5'- gGCGCCGGcgGCGCGCagaCGUUG--AACa -3'
miRNA:   3'- -CGCGGCCuaCGCGCGg--GCAGCagUUG- -5'
24260 3' -59.4 NC_005263.2 + 44674 0.68 0.363615
Target:  5'- cGCGCCGaaGAagucggcggccauccUGCGCGCacaCGUCGgCGGCc -3'
miRNA:   3'- -CGCGGC--CU---------------ACGCGCGg--GCAGCaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 44121 0.68 0.368684
Target:  5'- uGCGCUGcucggcGgcGCGCGCCCGUUa-CAACg -3'
miRNA:   3'- -CGCGGC------CuaCGCGCGGGCAGcaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 43135 0.7 0.256704
Target:  5'- cGUGCCuGGA-GCGCGCCggaacucaGUCGUCGc- -3'
miRNA:   3'- -CGCGG-CCUaCGCGCGGg-------CAGCAGUug -5'
24260 3' -59.4 NC_005263.2 + 41821 0.66 0.489627
Target:  5'- aGCGa-GGAagUGCGCaGCCCGUUcccaGUCAAg -3'
miRNA:   3'- -CGCggCCU--ACGCG-CGGGCAG----CAGUUg -5'
24260 3' -59.4 NC_005263.2 + 41496 0.69 0.320195
Target:  5'- cGCGCCGa--GCGCGCCgccgaacgcgauCG-CGUCGACu -3'
miRNA:   3'- -CGCGGCcuaCGCGCGG------------GCaGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 41162 0.76 0.109885
Target:  5'- cGCGCgGcGUGgGCGgCCGUCGUCGAUa -3'
miRNA:   3'- -CGCGgCcUACgCGCgGGCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 39094 0.67 0.444551
Target:  5'- -aGCCGGAcgGCgaguacgcgcgacucGUGCgCCGUgCGUCGGCg -3'
miRNA:   3'- cgCGGCCUa-CG---------------CGCG-GGCA-GCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 38912 0.68 0.368684
Target:  5'- aGCGCCGcccguUGCGCaCCCG-CGUCGc- -3'
miRNA:   3'- -CGCGGCcu---ACGCGcGGGCaGCAGUug -5'
24260 3' -59.4 NC_005263.2 + 38645 0.68 0.385054
Target:  5'- uGCaGCCGGgcGCGCcgcugcccgugguGCCCGUCuugaUCGGCc -3'
miRNA:   3'- -CG-CGGCCuaCGCG-------------CGGGCAGc---AGUUG- -5'
24260 3' -59.4 NC_005263.2 + 38629 0.69 0.320195
Target:  5'- aGCGCCGGc-GCGaaugaaGCCgCGUCGcgcaUCGACg -3'
miRNA:   3'- -CGCGGCCuaCGCg-----CGG-GCAGC----AGUUG- -5'
24260 3' -59.4 NC_005263.2 + 38419 0.68 0.368684
Target:  5'- cGCGUCGGGUGCGCcgGCgUGaCGcCGGCc -3'
miRNA:   3'- -CGCGGCCUACGCG--CGgGCaGCaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 37708 0.66 0.47964
Target:  5'- cGCGCCGGAcccGCuCGCCgGcCGgccCGGCg -3'
miRNA:   3'- -CGCGGCCUa--CGcGCGGgCaGCa--GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.