miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 3' -54.4 NC_005263.2 + 24555 0.66 0.731898
Target:  5'- gGGC-GGcGGCGGCUGCGCCaCGguCGGCa -3'
miRNA:   3'- gUUGaCCaUUGUUGGCGCGG-GC--GUCG- -5'
24262 3' -54.4 NC_005263.2 + 38379 0.66 0.688146
Target:  5'- -cACUGcuGUGGCGAacgagcgcaaGCGCgCCGCAGCg -3'
miRNA:   3'- guUGAC--CAUUGUUgg--------CGCG-GGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 36569 0.66 0.688146
Target:  5'- gCGGCaaGGUGACGacgaACCGCGCCgccuucauCGCGcGCg -3'
miRNA:   3'- -GUUGa-CCAUUGU----UGGCGCGG--------GCGU-CG- -5'
24262 3' -54.4 NC_005263.2 + 31375 0.66 0.688146
Target:  5'- uGACUGacgccgGGCAAUUGCGCCaccgcuCGCGGCc -3'
miRNA:   3'- gUUGACca----UUGUUGGCGCGG------GCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 1657 0.66 0.687038
Target:  5'- gAACUGGUcgaccGGCAGCUuuuuguaGCGCgCCGcCAGUu -3'
miRNA:   3'- gUUGACCA-----UUGUUGG-------CGCG-GGC-GUCG- -5'
24262 3' -54.4 NC_005263.2 + 20757 0.66 0.687038
Target:  5'- -cGCUGGcggccugUAACAugGCCGCGCCgcugauCGuCGGCg -3'
miRNA:   3'- guUGACC-------AUUGU--UGGCGCGG------GC-GUCG- -5'
24262 3' -54.4 NC_005263.2 + 44052 0.66 0.688146
Target:  5'- gGAuCUGG-AACAcgguGCUGCGgCgGCAGCg -3'
miRNA:   3'- gUU-GACCaUUGU----UGGCGCgGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 37752 0.66 0.688146
Target:  5'- ---aUGGUuugcucgaugucGGCAagcuGCCGCGCCUGC-GCg -3'
miRNA:   3'- guugACCA------------UUGU----UGGCGCGGGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 25519 0.66 0.699198
Target:  5'- uGACcGGaga-AGCCGCaCCCGCAGUc -3'
miRNA:   3'- gUUGaCCauugUUGGCGcGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 9451 0.66 0.688146
Target:  5'- aGACgGGcaccacgGGCAGCggCGCGCCCggcuGCAGCu -3'
miRNA:   3'- gUUGaCCa------UUGUUG--GCGCGGG----CGUCG- -5'
24262 3' -54.4 NC_005263.2 + 35987 0.66 0.699198
Target:  5'- gAGCgcgcGUAAUGGCgCGCGCgCCGCuGCg -3'
miRNA:   3'- gUUGac--CAUUGUUG-GCGCG-GGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 44546 0.66 0.699198
Target:  5'- gAugUGGU--CGGCCgacGCGCUgCGCGGCa -3'
miRNA:   3'- gUugACCAuuGUUGG---CGCGG-GCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 9358 0.66 0.731898
Target:  5'- ----cGGUGAaGGCgaGCGCCgGCGGCu -3'
miRNA:   3'- guugaCCAUUgUUGg-CGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 15387 0.66 0.731898
Target:  5'- ----gGGUAGCGACC-CGgCCGCcguGCa -3'
miRNA:   3'- guugaCCAUUGUUGGcGCgGGCGu--CG- -5'
24262 3' -54.4 NC_005263.2 + 17062 0.66 0.730821
Target:  5'- aCGGCUucaugaaGGUGcucgagcagcGCAcGCCGCGCCuCGCcGCa -3'
miRNA:   3'- -GUUGA-------CCAU----------UGU-UGGCGCGG-GCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 17755 0.66 0.710181
Target:  5'- cCGGC-GGcagcGCGGCCGCGCUCgGCAcGCg -3'
miRNA:   3'- -GUUGaCCau--UGUUGGCGCGGG-CGU-CG- -5'
24262 3' -54.4 NC_005263.2 + 12351 0.66 0.710181
Target:  5'- cCAGCcGcag-UAACCGCGCCCGC-GCc -3'
miRNA:   3'- -GUUGaCcauuGUUGGCGCGGGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 43847 0.66 0.710181
Target:  5'- uCGACcGGgcGCAACaaCGUgCGCGGCa -3'
miRNA:   3'- -GUUGaCCauUGUUGgcGCGgGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 38447 0.66 0.710181
Target:  5'- -uGCUcGGcGGCGACauuGCGCUCGaCAGCg -3'
miRNA:   3'- guUGA-CCaUUGUUGg--CGCGGGC-GUCG- -5'
24262 3' -54.4 NC_005263.2 + 46100 0.66 0.699198
Target:  5'- uGACgucgGGUAuCAuCCGCGCCgGCGugacGCu -3'
miRNA:   3'- gUUGa---CCAUuGUuGGCGCGGgCGU----CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.