miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 3' -54.4 NC_005263.2 + 157 0.72 0.354548
Target:  5'- ----cGGUGcgagcacGCGAuCCGCGCCCGgGGCg -3'
miRNA:   3'- guugaCCAU-------UGUU-GGCGCGGGCgUCG- -5'
24262 3' -54.4 NC_005263.2 + 689 0.69 0.521682
Target:  5'- -uGCUcGGUGagcGCGaucguGCCGcCGCCCGCgAGCg -3'
miRNA:   3'- guUGA-CCAU---UGU-----UGGC-GCGGGCG-UCG- -5'
24262 3' -54.4 NC_005263.2 + 729 0.67 0.654703
Target:  5'- uGGCgaGGUugauuGCcGuuGCGCCCuGCAGCa -3'
miRNA:   3'- gUUGa-CCAu----UGuUggCGCGGG-CGUCG- -5'
24262 3' -54.4 NC_005263.2 + 1469 0.7 0.47941
Target:  5'- -cGCUGcagcaugAACAGCagGCGCUCGCGGCa -3'
miRNA:   3'- guUGACca-----UUGUUGg-CGCGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 1502 0.7 0.500349
Target:  5'- gAACUGcGcgAGCGACgGCgagucaGCCUGCAGCg -3'
miRNA:   3'- gUUGAC-Ca-UUGUUGgCG------CGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 1657 0.66 0.687038
Target:  5'- gAACUGGUcgaccGGCAGCUuuuuguaGCGCgCCGcCAGUu -3'
miRNA:   3'- gUUGACCA-----UUGUUGG-------CGCG-GGC-GUCG- -5'
24262 3' -54.4 NC_005263.2 + 1997 0.72 0.35541
Target:  5'- cCGACUGuccuaGGCCGCGCcaaauCCGCAGCg -3'
miRNA:   3'- -GUUGACcauugUUGGCGCG-----GGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 2376 0.66 0.699198
Target:  5'- uCGACgcgGcGUAACccauGACgGCGCCgGCGGUc -3'
miRNA:   3'- -GUUGa--C-CAUUG----UUGgCGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 2684 0.68 0.609857
Target:  5'- ---gUGGUAGCuGAUCGCGCggCCGCucGGCa -3'
miRNA:   3'- guugACCAUUG-UUGGCGCG--GGCG--UCG- -5'
24262 3' -54.4 NC_005263.2 + 3308 0.67 0.654703
Target:  5'- --cCUGGgcGCGGCCGCGCgguguucaacguCUGCGcGCc -3'
miRNA:   3'- guuGACCauUGUUGGCGCG------------GGCGU-CG- -5'
24262 3' -54.4 NC_005263.2 + 3442 0.68 0.59867
Target:  5'- gCGAcCUGGUu--GACCuGCGCgUGCAGCu -3'
miRNA:   3'- -GUU-GACCAuugUUGG-CGCGgGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 4234 0.7 0.489827
Target:  5'- ----aGGUAGCGGCCuaGCCCGU-GCu -3'
miRNA:   3'- guugaCCAUUGUUGGcgCGGGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 4602 0.74 0.269477
Target:  5'- -------gAACGGCCGCGCCgGCAGCu -3'
miRNA:   3'- guugaccaUUGUUGGCGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 4719 0.66 0.721085
Target:  5'- gGACUcguccgGGUAcg--UCGCGCCCGCgAGCa -3'
miRNA:   3'- gUUGA------CCAUuguuGGCGCGGGCG-UCG- -5'
24262 3' -54.4 NC_005263.2 + 5008 0.67 0.677039
Target:  5'- aGACacGGUGccuuCcGCCGCGCUCGaCAGCc -3'
miRNA:   3'- gUUGa-CCAUu---GuUGGCGCGGGC-GUCG- -5'
24262 3' -54.4 NC_005263.2 + 5960 0.68 0.587513
Target:  5'- gCAACUGGcgcaccucGCGACaCGCcucGCgCGCAGCa -3'
miRNA:   3'- -GUUGACCau------UGUUG-GCG---CGgGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 7275 0.71 0.429061
Target:  5'- uCGACgGGgcgAGCGACaugacgCGUGCCUGCGGCc -3'
miRNA:   3'- -GUUGaCCa--UUGUUG------GCGCGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 7588 0.71 0.419369
Target:  5'- aGGCUaGGUcACAcuACCGUaGCCCGCuGCa -3'
miRNA:   3'- gUUGA-CCAuUGU--UGGCG-CGGGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 8145 0.68 0.576395
Target:  5'- aCAGCuucuUGcGUGaugaugcccuGCGACUGCGUuuGCAGCa -3'
miRNA:   3'- -GUUG----AC-CAU----------UGUUGGCGCGggCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 8778 0.69 0.54336
Target:  5'- cCAGCcccgGGUGagcagccaaccuGCGAUCGCGCgCGCAuGCg -3'
miRNA:   3'- -GUUGa---CCAU------------UGUUGGCGCGgGCGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.