miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 3' -54.4 NC_005263.2 + 11137 1.11 0.000772
Target:  5'- gCAACUGGUAACAACCGCGCCCGCAGCc -3'
miRNA:   3'- -GUUGACCAUUGUUGGCGCGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 35519 0.77 0.19041
Target:  5'- -cACUGGcgcgcCGACUGCGCCCgGCGGCg -3'
miRNA:   3'- guUGACCauu--GUUGGCGCGGG-CGUCG- -5'
24262 3' -54.4 NC_005263.2 + 33014 0.76 0.206069
Target:  5'- gAACUGGU-ACGACucggugcugcucaCGCGUCUGCAGCa -3'
miRNA:   3'- gUUGACCAuUGUUG-------------GCGCGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 42905 0.76 0.212295
Target:  5'- gCGAC-GGUAGgAcGCCGCGCCUGCAGg -3'
miRNA:   3'- -GUUGaCCAUUgU-UGGCGCGGGCGUCg -5'
24262 3' -54.4 NC_005263.2 + 44334 0.75 0.242655
Target:  5'- gCGugUGGgagAACAccguGCCGCuGCCCGCGcGCg -3'
miRNA:   3'- -GUugACCa--UUGU----UGGCG-CGGGCGU-CG- -5'
24262 3' -54.4 NC_005263.2 + 31601 0.75 0.242655
Target:  5'- cCggUUGGUcaugccggucgcGACGGCCGCGCggCGCAGCg -3'
miRNA:   3'- -GuuGACCA------------UUGUUGGCGCGg-GCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 13714 0.75 0.255778
Target:  5'- uCAGCUGGUcGCcguccgaCGUGCUCGCGGCg -3'
miRNA:   3'- -GUUGACCAuUGuug----GCGCGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 38085 0.75 0.262555
Target:  5'- gCAGCUcGGcGGCGguGCUGCGCCCGCAccugGCg -3'
miRNA:   3'- -GUUGA-CCaUUGU--UGGCGCGGGCGU----CG- -5'
24262 3' -54.4 NC_005263.2 + 4602 0.74 0.269477
Target:  5'- -------gAACGGCCGCGCCgGCAGCu -3'
miRNA:   3'- guugaccaUUGUUGGCGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 42235 0.74 0.291124
Target:  5'- -uGCaUGGgaugcgcauCGACCGCGCuuGCAGCa -3'
miRNA:   3'- guUG-ACCauu------GUUGGCGCGggCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 28220 0.74 0.297879
Target:  5'- --gUUGGUGGCcugcaucGGCCGCGCUCGCcGCg -3'
miRNA:   3'- guuGACCAUUG-------UUGGCGCGGGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 34926 0.73 0.306299
Target:  5'- cCGACaGGUAcGCAcucggcguuaguGCCGUGCCgGCAGCc -3'
miRNA:   3'- -GUUGaCCAU-UGU------------UGGCGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 25972 0.73 0.31411
Target:  5'- aCAGCgccccGUccGGCGAUCGCGCuuGCAGCg -3'
miRNA:   3'- -GUUGac---CA--UUGUUGGCGCGggCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 44677 0.73 0.338443
Target:  5'- uCAACcaGGUcGCGACgGCGCC-GCAGCa -3'
miRNA:   3'- -GUUGa-CCAuUGUUGgCGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 27279 0.73 0.338443
Target:  5'- cCGACUGcGcgaGGCcgAGCCGCGCCUGCAGa -3'
miRNA:   3'- -GUUGAC-Ca--UUG--UUGGCGCGGGCGUCg -5'
24262 3' -54.4 NC_005263.2 + 18627 0.72 0.346852
Target:  5'- gCGGCaGGUGGCAAcCCGgGCgCCGCuGGCg -3'
miRNA:   3'- -GUUGaCCAUUGUU-GGCgCG-GGCG-UCG- -5'
24262 3' -54.4 NC_005263.2 + 16713 0.72 0.354548
Target:  5'- gCAGCUGcagcGCAccuACCGCgcgagcaGCCCGCAGCa -3'
miRNA:   3'- -GUUGACcau-UGU---UGGCG-------CGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 157 0.72 0.354548
Target:  5'- ----cGGUGcgagcacGCGAuCCGCGCCCGgGGCg -3'
miRNA:   3'- guugaCCAU-------UGUU-GGCGCGGGCgUCG- -5'
24262 3' -54.4 NC_005263.2 + 1997 0.72 0.35541
Target:  5'- cCGACUGuccuaGGCCGCGCcaaauCCGCAGCg -3'
miRNA:   3'- -GUUGACcauugUUGGCGCG-----GGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 20979 0.72 0.35541
Target:  5'- aAGCcGGUAcggguucgguGCAauucGCCGCGCCCGUcgaAGCg -3'
miRNA:   3'- gUUGaCCAU----------UGU----UGGCGCGGGCG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.