miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 3' -54.4 NC_005263.2 + 11137 1.11 0.000772
Target:  5'- gCAACUGGUAACAACCGCGCCCGCAGCc -3'
miRNA:   3'- -GUUGACCAUUGUUGGCGCGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 30436 0.7 0.500349
Target:  5'- -uGCUGGU--CGACCGUGCCaaaaCGCGGg -3'
miRNA:   3'- guUGACCAuuGUUGGCGCGG----GCGUCg -5'
24262 3' -54.4 NC_005263.2 + 45933 0.69 0.510969
Target:  5'- aGGCUGGgcGCGucUCGCGCCgGauCAGCg -3'
miRNA:   3'- gUUGACCauUGUu-GGCGCGGgC--GUCG- -5'
24262 3' -54.4 NC_005263.2 + 20639 0.66 0.731898
Target:  5'- aGGCcgUGGccGCAgugGCCGCGCCgcucguCGCGGCc -3'
miRNA:   3'- gUUG--ACCauUGU---UGGCGCGG------GCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 4602 0.74 0.269477
Target:  5'- -------gAACGGCCGCGCCgGCAGCu -3'
miRNA:   3'- guugaccaUUGUUGGCGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 34926 0.73 0.306299
Target:  5'- cCGACaGGUAcGCAcucggcguuaguGCCGUGCCgGCAGCc -3'
miRNA:   3'- -GUUGaCCAU-UGU------------UGGCGCGGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 18627 0.72 0.346852
Target:  5'- gCGGCaGGUGGCAAcCCGgGCgCCGCuGGCg -3'
miRNA:   3'- -GUUGaCCAUUGUU-GGCgCG-GGCG-UCG- -5'
24262 3' -54.4 NC_005263.2 + 157 0.72 0.354548
Target:  5'- ----cGGUGcgagcacGCGAuCCGCGCCCGgGGCg -3'
miRNA:   3'- guugaCCAU-------UGUU-GGCGCGGGCgUCG- -5'
24262 3' -54.4 NC_005263.2 + 45251 0.72 0.391107
Target:  5'- aCAACUGGcgGGCgGGCCG-GCCCGCAu- -3'
miRNA:   3'- -GUUGACCa-UUG-UUGGCgCGGGCGUcg -5'
24262 3' -54.4 NC_005263.2 + 1502 0.7 0.500349
Target:  5'- gAACUGcGcgAGCGACgGCgagucaGCCUGCAGCg -3'
miRNA:   3'- gUUGAC-Ca-UUGUUGgCG------CGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 9518 0.71 0.429061
Target:  5'- gGGCUGaaucguGCGGCCGUGCgCgGCAGCg -3'
miRNA:   3'- gUUGACcau---UGUUGGCGCG-GgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 38721 0.72 0.381966
Target:  5'- gCAGCUGGcc---GCCGCGCugaaauucCCGCAGCc -3'
miRNA:   3'- -GUUGACCauuguUGGCGCG--------GGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 31601 0.75 0.242655
Target:  5'- cCggUUGGUcaugccggucgcGACGGCCGCGCggCGCAGCg -3'
miRNA:   3'- -GuuGACCA------------UUGUUGGCGCGg-GCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 13851 0.71 0.429061
Target:  5'- ----cGGUAcucggGCAGCUGCGCgaGCAGCa -3'
miRNA:   3'- guugaCCAU-----UGUUGGCGCGggCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 44334 0.75 0.242655
Target:  5'- gCGugUGGgagAACAccguGCCGCuGCCCGCGcGCg -3'
miRNA:   3'- -GUugACCa--UUGU----UGGCG-CGGGCGU-CG- -5'
24262 3' -54.4 NC_005263.2 + 38646 0.72 0.372968
Target:  5'- gCAGCcGGgcGC-GCCGCuGCCCGUGGUg -3'
miRNA:   3'- -GUUGaCCauUGuUGGCG-CGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 15343 0.7 0.478374
Target:  5'- uCGACUuugcgucGGUcGCAuugcGCCGCGCaaGCGGCa -3'
miRNA:   3'- -GUUGA-------CCAuUGU----UGGCGCGggCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 30718 0.7 0.500349
Target:  5'- ----aGGcgcGCGGCCGCGCCgGCAGa -3'
miRNA:   3'- guugaCCau-UGUUGGCGCGGgCGUCg -5'
24262 3' -54.4 NC_005263.2 + 13714 0.75 0.255778
Target:  5'- uCAGCUGGUcGCcguccgaCGUGCUCGCGGCg -3'
miRNA:   3'- -GUUGACCAuUGuug----GCGCGGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 25972 0.73 0.31411
Target:  5'- aCAGCgccccGUccGGCGAUCGCGCuuGCAGCg -3'
miRNA:   3'- -GUUGac---CA--UUGUUGGCGCGggCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.