miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 5' -57.5 NC_005263.2 + 9464 0.66 0.568994
Target:  5'- gGGCaGCGGCGCGCcc---GGCUGCa -3'
miRNA:   3'- gCCGaCGCUGUGCGccaauUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 10252 0.66 0.568994
Target:  5'- uGGauucgGCG-CACGCGGUUcgcgaAAcGCCGCg -3'
miRNA:   3'- gCCga---CGCuGUGCGCCAA-----UU-CGGCGa -5'
24262 5' -57.5 NC_005263.2 + 1371 0.66 0.558192
Target:  5'- cCGGCgGCGGCcuugaacgaGCGCaug-AAGCCGCg -3'
miRNA:   3'- -GCCGaCGCUG---------UGCGccaaUUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 2445 0.66 0.558192
Target:  5'- aCGGC-GCGGCaaacacuuGCGCGccgaacgAAGCCGCg -3'
miRNA:   3'- -GCCGaCGCUG--------UGCGCcaa----UUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 45262 0.66 0.558192
Target:  5'- -cGCUGCGACGCugaucgAAGCCGCa -3'
miRNA:   3'- gcCGACGCUGUGcgccaaUUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 47315 0.66 0.547449
Target:  5'- cCGGCgGcCGGCACGCucaaGGUcgaaGGGCUGCa -3'
miRNA:   3'- -GCCGaC-GCUGUGCG----CCAa---UUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 23542 0.66 0.547449
Target:  5'- uCGGCgUGcCGAC-CGUGGcgcAGCCGCc -3'
miRNA:   3'- -GCCG-AC-GCUGuGCGCCaauUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 9540 0.66 0.547449
Target:  5'- gCGGCaGCGACcgACGCGGcgcucGCgGCUu -3'
miRNA:   3'- -GCCGaCGCUG--UGCGCCaauu-CGgCGA- -5'
24262 5' -57.5 NC_005263.2 + 30922 0.66 0.547449
Target:  5'- gCGGCgacgGCGuACGCGCG----AGCUGCg -3'
miRNA:   3'- -GCCGa---CGC-UGUGCGCcaauUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 3311 0.66 0.529342
Target:  5'- gGGC-GCGGcCGCGCGGUguucaacgucugcgcGCCGCc -3'
miRNA:   3'- gCCGaCGCU-GUGCGCCAauu------------CGGCGa -5'
24262 5' -57.5 NC_005263.2 + 17749 0.66 0.526169
Target:  5'- uCGGCgccgGCGGCAgCGCGGccgcgcucGGCaCGCg -3'
miRNA:   3'- -GCCGa---CGCUGU-GCGCCaau-----UCG-GCGa -5'
24262 5' -57.5 NC_005263.2 + 27117 0.66 0.526169
Target:  5'- cCGGCacGuCGACGCGCaGGcgcgcAGCCGCg -3'
miRNA:   3'- -GCCGa-C-GCUGUGCG-CCaau--UCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 35754 0.66 0.526169
Target:  5'- aGGC-GCGG-GCGCGGUUAcuGCgGCUg -3'
miRNA:   3'- gCCGaCGCUgUGCGCCAAUu-CGgCGA- -5'
24262 5' -57.5 NC_005263.2 + 18618 0.66 0.521949
Target:  5'- gCGGCguucGCGGCAgGUGGcaacccgggcGCCGCUg -3'
miRNA:   3'- -GCCGa---CGCUGUgCGCCaauu------CGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 29081 0.66 0.515645
Target:  5'- aCGGC-GCGAUagGCGCGGUUcAGCgacgGCg -3'
miRNA:   3'- -GCCGaCGCUG--UGCGCCAAuUCGg---CGa -5'
24262 5' -57.5 NC_005263.2 + 38538 0.66 0.515645
Target:  5'- gGGCaGCGAgCGCGCcgccuGgcAAGCCGCg -3'
miRNA:   3'- gCCGaCGCU-GUGCGc----CaaUUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 31020 0.66 0.515645
Target:  5'- aGuGCgGCGAgGCGCGGcgUGcGCUGCUc -3'
miRNA:   3'- gC-CGaCGCUgUGCGCCa-AUuCGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 45708 0.66 0.514597
Target:  5'- aCGGCgaccaaGCGAC-CGCcggcgccgucaugGGUUAcGCCGCg -3'
miRNA:   3'- -GCCGa-----CGCUGuGCG-------------CCAAUuCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 29562 0.67 0.502094
Target:  5'- gGGCUGCGcgaacuucuugaacGCGCucGCGGUgucgacGCCGCc -3'
miRNA:   3'- gCCGACGC--------------UGUG--CGCCAauu---CGGCGa -5'
24262 5' -57.5 NC_005263.2 + 19394 0.67 0.484613
Target:  5'- uCGGCgGCGcgcaguacggcaACGCGCGcGUUGAgguguucggcguGCCGCUc -3'
miRNA:   3'- -GCCGaCGC------------UGUGCGC-CAAUU------------CGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.