miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 9715 0.68 0.645966
Target:  5'- aCaGUgcGUCGAUcaGUUCgGCCUCGGGCGg -3'
miRNA:   3'- gGcCA--UAGCUG--CAAG-CGGAGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 19783 0.68 0.679732
Target:  5'- aCGGgcUCGGCGgccgaccagauucgCGCCgCGAucGCGCa -3'
miRNA:   3'- gGCCauAGCUGCaa------------GCGGaGCU--CGCG- -5'
24263 3' -54.4 NC_005263.2 + 45782 0.68 0.678648
Target:  5'- aCGGUGcUCG-CGUUcCGCCaguucaacgCGGGCGUg -3'
miRNA:   3'- gGCCAU-AGCuGCAA-GCGGa--------GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 22323 0.68 0.678648
Target:  5'- gCGGgcGUCGACGUcgagUCGCgcagugagUUCGAGaCGCg -3'
miRNA:   3'- gGCCa-UAGCUGCA----AGCG--------GAGCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 41788 0.68 0.667783
Target:  5'- -aGcGUAUCGgcACGUUUGCaaacCGGGCGCg -3'
miRNA:   3'- ggC-CAUAGC--UGCAAGCGga--GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 16417 0.68 0.667783
Target:  5'- gCGGUAcUCGGCGUcggCGCU---GGCGCg -3'
miRNA:   3'- gGCCAU-AGCUGCAa--GCGGagcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 17336 0.68 0.666695
Target:  5'- gCCGGUGgcuUCGACGUUCGgCaucgcggUCGAcgauccgaaccGCGUg -3'
miRNA:   3'- -GGCCAU---AGCUGCAAGCgG-------AGCU-----------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 41146 0.68 0.656886
Target:  5'- uCCGGaaacCGGCGUUCGCgCggcgUGGGCGg -3'
miRNA:   3'- -GGCCaua-GCUGCAAGCG-Ga---GCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 46162 0.68 0.645966
Target:  5'- gCGGUugcCGGCG-UCGCCggugCcGGCGCg -3'
miRNA:   3'- gGCCAua-GCUGCaAGCGGa---GcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 1165 0.68 0.689469
Target:  5'- gCCcGUcgCGGCGacuugUGCCUCGugcuGCGCg -3'
miRNA:   3'- -GGcCAuaGCUGCaa---GCGGAGCu---CGCG- -5'
24263 3' -54.4 NC_005263.2 + 45106 0.67 0.710936
Target:  5'- --cGUcgCGGCGgaugCGCCggCGAGCGUc -3'
miRNA:   3'- ggcCAuaGCUGCaa--GCGGa-GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 39029 0.67 0.710936
Target:  5'- gCCGGUcgCGcUGUUCGgCaCGGGCGa -3'
miRNA:   3'- -GGCCAuaGCuGCAAGCgGaGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 10731 0.66 0.783073
Target:  5'- gCCaGGg--CGACGca-GaCUCGAGCGCa -3'
miRNA:   3'- -GG-CCauaGCUGCaagCgGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 35970 0.66 0.773143
Target:  5'- -aGGcgcUCGAC---CGCCUgGAGCGCg -3'
miRNA:   3'- ggCCau-AGCUGcaaGCGGAgCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 36070 0.66 0.752863
Target:  5'- aCGGaagCGAUGUaccggCGCaagCUUGAGCGCg -3'
miRNA:   3'- gGCCauaGCUGCAa----GCG---GAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 20667 0.66 0.752863
Target:  5'- aUCGGgcUCGcagUGUUUGCC--GAGCGCg -3'
miRNA:   3'- -GGCCauAGCu--GCAAGCGGagCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 29717 0.67 0.742535
Target:  5'- cCCGcGUGcCGGCGaagaacUUCGCCUUGAucgucugcagguGCGCc -3'
miRNA:   3'- -GGC-CAUaGCUGC------AAGCGGAGCU------------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 25932 0.67 0.732098
Target:  5'- aCCGGUucgccCGGCGcuggCGCaaugCGAGCGUc -3'
miRNA:   3'- -GGCCAua---GCUGCaa--GCGga--GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 5956 0.67 0.731048
Target:  5'- aCCGGcaacuggcgcaccUcgCGACa--CGCCUCGcGCGCa -3'
miRNA:   3'- -GGCC-------------AuaGCUGcaaGCGGAGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 16526 0.67 0.720502
Target:  5'- aCCGGcaaaUGUCGGCGUUgucgagcacggcgCGCCgccUGGGCaGCg -3'
miRNA:   3'- -GGCC----AUAGCUGCAA-------------GCGGa--GCUCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.