miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 5' -53.7 NC_005263.2 + 32103 0.66 0.755138
Target:  5'- -gGCGUcggugCGAUCGAGCGCuu---CGAg -3'
miRNA:   3'- aaCGCGa----GCUAGCUCGCGuucauGCU- -5'
24263 5' -53.7 NC_005263.2 + 10203 0.66 0.755138
Target:  5'- -aGCGCUCGccggccUCGGGCuCGAGUccagacGCGAu -3'
miRNA:   3'- aaCGCGAGCu-----AGCUCGcGUUCA------UGCU- -5'
24263 5' -53.7 NC_005263.2 + 9728 0.66 0.751941
Target:  5'- cUUGCGCUCGuucgccacagcaguGUCGAuCGC-GGUGCGc -3'
miRNA:   3'- -AACGCGAGC--------------UAGCUcGCGuUCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 12061 0.66 0.744437
Target:  5'- cUGuCGgUCGAccgagaCGGGCGCGAGUACc- -3'
miRNA:   3'- aAC-GCgAGCUa-----GCUCGCGUUCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 35971 0.66 0.733614
Target:  5'- -gGCGCUCGAccgccUgGAGCGCGcGUaAUGGc -3'
miRNA:   3'- aaCGCGAGCU-----AgCUCGCGUuCA-UGCU- -5'
24263 5' -53.7 NC_005263.2 + 27258 0.66 0.733614
Target:  5'- -cGaCGCUCGcGUCGAauuggcccgacuGCGCGAGgcCGAg -3'
miRNA:   3'- aaC-GCGAGC-UAGCU------------CGCGUUCauGCU- -5'
24263 5' -53.7 NC_005263.2 + 14051 0.66 0.733614
Target:  5'- -gGCGC-CGcGUCGAGCGCAuugAGcGCGc -3'
miRNA:   3'- aaCGCGaGC-UAGCUCGCGU---UCaUGCu -5'
24263 5' -53.7 NC_005263.2 + 46610 0.66 0.733614
Target:  5'- gUGCGCUCGAaagaaacCGAGUGCc---GCGAg -3'
miRNA:   3'- aACGCGAGCUa------GCUCGCGuucaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 22562 0.66 0.723781
Target:  5'- -cGCGCUCGcgaucaacucgaagcUCGAcUGCGGGUGCGGc -3'
miRNA:   3'- aaCGCGAGCu--------------AGCUcGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 12137 0.66 0.722684
Target:  5'- -cGCGCUccaggCGGUCGAGCGCcu-UGCa- -3'
miRNA:   3'- aaCGCGA-----GCUAGCUCGCGuucAUGcu -5'
24263 5' -53.7 NC_005263.2 + 30420 0.66 0.722684
Target:  5'- cUGCaGCaggucggugCGGUCGAGCGCGAGcaGCGu -3'
miRNA:   3'- aACG-CGa--------GCUAGCUCGCGUUCa-UGCu -5'
24263 5' -53.7 NC_005263.2 + 34061 0.66 0.722684
Target:  5'- aUGCGCUCGA-CGcGGCGCccguGgcCGAa -3'
miRNA:   3'- aACGCGAGCUaGC-UCGCGuu--CauGCU- -5'
24263 5' -53.7 NC_005263.2 + 2166 0.66 0.711657
Target:  5'- -gGCGCU-GAUCcGGCGCGAG-ACGc -3'
miRNA:   3'- aaCGCGAgCUAGcUCGCGUUCaUGCu -5'
24263 5' -53.7 NC_005263.2 + 18286 0.66 0.711657
Target:  5'- aUGCGCUCG-UCGuGCGCGc-UGCa- -3'
miRNA:   3'- aACGCGAGCuAGCuCGCGUucAUGcu -5'
24263 5' -53.7 NC_005263.2 + 38402 0.66 0.711657
Target:  5'- -aGCGCgccgcagCGGUCGAgcaggcaaaGCGCGAcGUGCGu -3'
miRNA:   3'- aaCGCGa------GCUAGCU---------CGCGUU-CAUGCu -5'
24263 5' -53.7 NC_005263.2 + 9214 0.66 0.711657
Target:  5'- -gGCGCUCGuaCG-GCGCGcGGUACGu -3'
miRNA:   3'- aaCGCGAGCuaGCuCGCGU-UCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 26075 0.67 0.701662
Target:  5'- gUUGCGCgucaugaaguagaugCGGcCGAGCGCGuccuGGUACGc -3'
miRNA:   3'- -AACGCGa--------------GCUaGCUCGCGU----UCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 37374 0.67 0.699432
Target:  5'- aUGCGCUCGAgucugcgUCGcccuggcuGCGCGAcGUGCa- -3'
miRNA:   3'- aACGCGAGCU-------AGCu-------CGCGUU-CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 10325 0.67 0.689367
Target:  5'- -cGaCGCUCG-UCGAucucGCGCAGGcGCGGc -3'
miRNA:   3'- aaC-GCGAGCuAGCU----CGCGUUCaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 36557 0.67 0.678128
Target:  5'- ---aGCUCG-UCGAGCGCGgcaaGGUgACGAc -3'
miRNA:   3'- aacgCGAGCuAGCUCGCGU----UCA-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.