miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 47729 0.67 0.17859
Target:  5'- gGCAUCGUugGCGGuuGCCGCcuguucgcgaaagGCaucuGGCUGg -3'
miRNA:   3'- gCGUAGCG--CGCCggCGGCG-------------CG----CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 47196 0.69 0.128307
Target:  5'- uGCGUCGacgaguaacccgccgGCGGCgacCGCCGCGCugaacgaagcgccGGCCGg -3'
miRNA:   3'- gCGUAGCg--------------CGCCG---GCGGCGCG-------------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 46737 0.66 0.197922
Target:  5'- gCGC-UCGUucaaGGCCGCCGC-CGGCa- -3'
miRNA:   3'- -GCGuAGCGcg--CCGGCGGCGcGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 46678 0.71 0.088764
Target:  5'- aGCcUCGCGCGcaGCCaagGCgGCGCGcGCCGa -3'
miRNA:   3'- gCGuAGCGCGC--CGG---CGgCGCGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 46537 0.67 0.193045
Target:  5'- gGUAUCGa-CGGCaCGCUGU-CGGCCGg -3'
miRNA:   3'- gCGUAGCgcGCCG-GCGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 46502 0.67 0.179041
Target:  5'- gGCGUCGaaGUGuCCGCCGCGCuGCuCGg -3'
miRNA:   3'- gCGUAGCg-CGCcGGCGGCGCGcCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 46151 0.71 0.08416
Target:  5'- aGCAgaUCGaCGCGGuuGCCgGCGUcGCCGg -3'
miRNA:   3'- gCGU--AGC-GCGCCggCGG-CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 46058 0.69 0.131684
Target:  5'- cCGCGaacuacCGCGCGGgCGUCGacgugaucgaUGCGGCCGu -3'
miRNA:   3'- -GCGUa-----GCGCGCCgGCGGC----------GCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 45396 0.67 0.193045
Target:  5'- uGCAcgCGCGCuGCgcaugcaccUGCCGaGCGGCCGc -3'
miRNA:   3'- gCGUa-GCGCGcCG---------GCGGCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 44889 0.66 0.213202
Target:  5'- gGCGUcaucggggCGgGCGGCgGCCGgGcCGGCUc -3'
miRNA:   3'- gCGUA--------GCgCGCCGgCGGCgC-GCCGGc -5'
24284 3' -66.7 NC_005263.2 + 44773 0.73 0.062482
Target:  5'- gCGCggCGCcgGCGGCgCGCagacguugaacacCGCGCGGCCGc -3'
miRNA:   3'- -GCGuaGCG--CGCCG-GCG-------------GCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 44665 0.74 0.047782
Target:  5'- uGCGUCGCGCGcGCCGaaGaagucgGCGGCCa -3'
miRNA:   3'- gCGUAGCGCGC-CGGCggCg-----CGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 44014 0.65 0.227811
Target:  5'- uCGCGUcCGCuCGGCaaggguggcgacuuCGCCGCguuccgugGCGGCUGg -3'
miRNA:   3'- -GCGUA-GCGcGCCG--------------GCGGCG--------CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 43500 0.68 0.149826
Target:  5'- gGCAcCuCGaaGCUGCCgGCGCGGCCGu -3'
miRNA:   3'- gCGUaGcGCgcCGGCGG-CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 43060 0.67 0.165946
Target:  5'- cCGaCGUCGgccaauaGuCGGCCGCCGgGCcGGCUGu -3'
miRNA:   3'- -GC-GUAGCg------C-GCCGGCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 42875 0.68 0.1577
Target:  5'- gCGCcugAUCGCGUcaauGGCgUGCCGCGCGcucGCCu -3'
miRNA:   3'- -GCG---UAGCGCG----CCG-GCGGCGCGC---CGGc -5'
24284 3' -66.7 NC_005263.2 + 42561 0.74 0.049099
Target:  5'- uGCAuUCGCGCcaGGCCGuuGC-CGGCCa -3'
miRNA:   3'- gCGU-AGCGCG--CCGGCggCGcGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 42016 0.7 0.10683
Target:  5'- gGCA--GUGCGGCCgGCCGCGCcaaGGCUu -3'
miRNA:   3'- gCGUagCGCGCCGG-CGGCGCG---CCGGc -5'
24284 3' -66.7 NC_005263.2 + 41543 0.76 0.037382
Target:  5'- gCGCAaaCGCGCGGCgCGCCGUgGCGGCg- -3'
miRNA:   3'- -GCGUa-GCGCGCCG-GCGGCG-CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 41156 0.71 0.091154
Target:  5'- gGCGuUCGCGCGG-CGUgG-GCGGCCGu -3'
miRNA:   3'- gCGU-AGCGCGCCgGCGgCgCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.