miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24287 5' -57.3 NC_005263.2 + 37710 0.66 0.585617
Target:  5'- -cGcCGGAcccgcucgccGGCCGGccCGGCGCGUgGCGg -3'
miRNA:   3'- caC-GCCU----------UCGGCUu-GCCGCGCA-UGCa -5'
24287 5' -57.3 NC_005263.2 + 45841 0.66 0.574763
Target:  5'- -cGCaaccuuGGCCGAgcgcGCGGCGCGcUACGg -3'
miRNA:   3'- caCGccu---UCGGCU----UGCCGCGC-AUGCa -5'
24287 5' -57.3 NC_005263.2 + 30906 0.66 0.563955
Target:  5'- cGUGCacGAGUCGAgcGCGGCgacgGCGUACGc -3'
miRNA:   3'- -CACGccUUCGGCU--UGCCG----CGCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 18604 0.66 0.563955
Target:  5'- -cGaCGGAcGCCGcAGCGGCGUucGCGg -3'
miRNA:   3'- caC-GCCUuCGGC-UUGCCGCGcaUGCa -5'
24287 5' -57.3 NC_005263.2 + 39348 0.66 0.553203
Target:  5'- -gGCuGGcAGCCGAuucgcucggcgGCGGCGCGcuucUACGa -3'
miRNA:   3'- caCG-CCuUCGGCU-----------UGCCGCGC----AUGCa -5'
24287 5' -57.3 NC_005263.2 + 14444 0.66 0.553203
Target:  5'- cGUGCGcGcgcgccucuuucGAGCCGAGCGGCG-GcACGc -3'
miRNA:   3'- -CACGC-C------------UUCGGCUUGCCGCgCaUGCa -5'
24287 5' -57.3 NC_005263.2 + 35389 0.66 0.553203
Target:  5'- -cGCGGcugaacaccGAGCCGGACGGCcCcUACGc -3'
miRNA:   3'- caCGCC---------UUCGGCUUGCCGcGcAUGCa -5'
24287 5' -57.3 NC_005263.2 + 42520 0.66 0.542512
Target:  5'- cGUGCGGAuGCCcGACGGC-CGcACa- -3'
miRNA:   3'- -CACGCCUuCGGcUUGCCGcGCaUGca -5'
24287 5' -57.3 NC_005263.2 + 1443 0.67 0.531891
Target:  5'- -cGCGcGAGGCUucGCGGCGCucGCGg -3'
miRNA:   3'- caCGC-CUUCGGcuUGCCGCGcaUGCa -5'
24287 5' -57.3 NC_005263.2 + 17379 0.67 0.531891
Target:  5'- -cGCGuGAAGCUGucugcCGGCGCGgcCGc -3'
miRNA:   3'- caCGC-CUUCGGCuu---GCCGCGCauGCa -5'
24287 5' -57.3 NC_005263.2 + 36305 0.67 0.521345
Target:  5'- -cGCGcGAAGUgaCGAcCGGCGCGUuCGa -3'
miRNA:   3'- caCGC-CUUCG--GCUuGCCGCGCAuGCa -5'
24287 5' -57.3 NC_005263.2 + 4538 0.67 0.521345
Target:  5'- cGUGCGGcgcuguGCCGAcgGCGGCauugacGCGUAUa- -3'
miRNA:   3'- -CACGCCuu----CGGCU--UGCCG------CGCAUGca -5'
24287 5' -57.3 NC_005263.2 + 11894 0.67 0.510882
Target:  5'- -cGCGGc-GCCGGGCGccuGCGCGcugGCGUc -3'
miRNA:   3'- caCGCCuuCGGCUUGC---CGCGCa--UGCA- -5'
24287 5' -57.3 NC_005263.2 + 45808 0.67 0.510882
Target:  5'- -cGCGGGcguGCCGGccACGGCGC--ACGa -3'
miRNA:   3'- caCGCCUu--CGGCU--UGCCGCGcaUGCa -5'
24287 5' -57.3 NC_005263.2 + 4065 0.67 0.510882
Target:  5'- cGUGUuccagauccaGAAGUCGAACGGUGCGUuguGCGc -3'
miRNA:   3'- -CACGc---------CUUCGGCUUGCCGCGCA---UGCa -5'
24287 5' -57.3 NC_005263.2 + 25414 0.67 0.490226
Target:  5'- -gGCaGAcAGCCauccuCGGCGCGUGCGg -3'
miRNA:   3'- caCGcCU-UCGGcuu--GCCGCGCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 43246 0.67 0.490226
Target:  5'- -gGCGGcAGCggcauCGGcACGGCGCGcGCGUa -3'
miRNA:   3'- caCGCCuUCG-----GCU-UGCCGCGCaUGCA- -5'
24287 5' -57.3 NC_005263.2 + 35733 0.67 0.490226
Target:  5'- -gGCGaGAcGCCGGaagaaGCGGCGCGgcGCGa -3'
miRNA:   3'- caCGC-CUuCGGCU-----UGCCGCGCa-UGCa -5'
24287 5' -57.3 NC_005263.2 + 7690 0.67 0.480045
Target:  5'- --cCGGGuucgagucGGCCGcGCGGCGUGUGCa- -3'
miRNA:   3'- cacGCCU--------UCGGCuUGCCGCGCAUGca -5'
24287 5' -57.3 NC_005263.2 + 22369 0.67 0.480045
Target:  5'- -gGCGGAcaGGUCGugcACGGCGCGcaGCGc -3'
miRNA:   3'- caCGCCU--UCGGCu--UGCCGCGCa-UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.