miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 47132 0.66 0.647773
Target:  5'- aAGCGCCgucCGACGCGCagGCGaccGCCGc -3'
miRNA:   3'- cUUGUGGa--GUUGCGCG--CGCaa-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 45796 0.72 0.334777
Target:  5'- --cCGCCaguUCAACGCGgGCG-UGCCGg -3'
miRNA:   3'- cuuGUGG---AGUUGCGCgCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 45458 0.69 0.484262
Target:  5'- -uGCACCUCGAgccCG-GCGCGaacgUGCCGa -3'
miRNA:   3'- cuUGUGGAGUU---GCgCGCGCa---ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 44749 0.71 0.38674
Target:  5'- -cGCACugucuggucgCUCGAcCGCGCGCGgcGCCGg -3'
miRNA:   3'- cuUGUG----------GAGUU-GCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 44655 0.76 0.18877
Target:  5'- -uGCGCCUCGAUGCGuCGCGcgcGCCGa -3'
miRNA:   3'- cuUGUGGAGUUGCGC-GCGCaa-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 44388 0.69 0.463772
Target:  5'- uGGACAUgcguaUCAACGCGCGCGgcaUUGgCGUc -3'
miRNA:   3'- -CUUGUGg----AGUUGCGCGCGC---AACgGCA- -5'
24296 3' -55.4 NC_005263.2 + 44123 0.68 0.559006
Target:  5'- -cGCugCUCGGCgGCGCGCGc--CCGUu -3'
miRNA:   3'- cuUGugGAGUUG-CGCGCGCaacGGCA- -5'
24296 3' -55.4 NC_005263.2 + 43852 0.68 0.505176
Target:  5'- cGGGCGCaaCAACGUGCGCGgcauccugacGCCGa -3'
miRNA:   3'- -CUUGUGgaGUUGCGCGCGCaa--------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 43499 0.67 0.614321
Target:  5'- cGGCACCUCGAagcUGCcgGCGCG--GCCGUu -3'
miRNA:   3'- cUUGUGGAGUU---GCG--CGCGCaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 42465 0.71 0.377718
Target:  5'- aGAAaACCgguaacggCAugGUGCGCGUUGCCu- -3'
miRNA:   3'- -CUUgUGGa-------GUugCGCGCGCAACGGca -5'
24296 3' -55.4 NC_005263.2 + 41603 0.66 0.658908
Target:  5'- cGACcgGCUUCAACGCGC-CGUUcGUCGa -3'
miRNA:   3'- cUUG--UGGAGUUGCGCGcGCAA-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 41536 0.67 0.592082
Target:  5'- -uGCGCCUgcgcaAACGCGCGgCGc-GCCGUg -3'
miRNA:   3'- cuUGUGGAg----UUGCGCGC-GCaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 41484 0.67 0.603189
Target:  5'- cGACugCUCGaccGCGCcgaGCGCGccGCCGa -3'
miRNA:   3'- cUUGugGAGU---UGCG---CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 41477 0.75 0.199311
Target:  5'- -cGCugCUCGACGCGgGCGagucgGCCGUc -3'
miRNA:   3'- cuUGugGAGUUGCGCgCGCaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 38542 0.7 0.399606
Target:  5'- cAGCGCCuggacacguucuuugUCGACcuguGCGaCGCGUUGCCGUc -3'
miRNA:   3'- cUUGUGG---------------AGUUG----CGC-GCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 38018 0.68 0.526469
Target:  5'- cGAACAuUCUCGACGCGCugcccGCGUcGCuCGg -3'
miRNA:   3'- -CUUGU-GGAGUUGCGCG-----CGCAaCG-GCa -5'
24296 3' -55.4 NC_005263.2 + 37440 0.72 0.343073
Target:  5'- -cAUACgUCGGCGCGCGCGgucUGCgCGg -3'
miRNA:   3'- cuUGUGgAGUUGCGCGCGCa--ACG-GCa -5'
24296 3' -55.4 NC_005263.2 + 37222 0.74 0.259933
Target:  5'- -uACGCCgcucaCGACGCGCGCcggUGCCGa -3'
miRNA:   3'- cuUGUGGa----GUUGCGCGCGca-ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 37016 0.67 0.568882
Target:  5'- cAGCugCUU-ACGCGCGgCGUcaucccacgcuuuUGCCGUg -3'
miRNA:   3'- cUUGugGAGuUGCGCGC-GCA-------------ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 36114 0.67 0.614321
Target:  5'- cGAGCugGCCcguaacaCGACGCuGCGCGccUGCCGUa -3'
miRNA:   3'- -CUUG--UGGa------GUUGCG-CGCGCa-ACGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.