Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 28982 | 0.67 | 0.569982 |
Target: 5'- aAGCGCCcggCGAUGCGCucgGCGcgGCCGa -3' miRNA: 3'- cUUGUGGa--GUUGCGCG---CGCaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 34050 | 0.66 | 0.625469 |
Target: 5'- cGGCGCgCUCAAUGCGCucgacGCGgcGcCCGUg -3' miRNA: 3'- cUUGUG-GAGUUGCGCG-----CGCaaC-GGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 43499 | 0.67 | 0.614321 |
Target: 5'- cGGCACCUCGAagcUGCcgGCGCG--GCCGUu -3' miRNA: 3'- cUUGUGGAGUU---GCG--CGCGCaaCGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 17485 | 0.67 | 0.603189 |
Target: 5'- uGAACGCCcUGAuCGCGCGCGgcgcGUCGa -3' miRNA: 3'- -CUUGUGGaGUU-GCGCGCGCaa--CGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 41484 | 0.67 | 0.603189 |
Target: 5'- cGACugCUCGaccGCGCcgaGCGCGccGCCGa -3' miRNA: 3'- cUUGugGAGU---UGCG---CGCGCaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 9071 | 0.67 | 0.603189 |
Target: 5'- uAGCGCCUCGACGUGCcaguuCGggucgaucgGCCGg -3' miRNA: 3'- cUUGUGGAGUUGCGCGc----GCaa-------CGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 19622 | 0.67 | 0.602077 |
Target: 5'- cGAACGCCUCGuACGCGUugauggcugaaguGaUGUcGCCGUa -3' miRNA: 3'- -CUUGUGGAGU-UGCGCG-------------C-GCAaCGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 41536 | 0.67 | 0.592082 |
Target: 5'- -uGCGCCUgcgcaAACGCGCGgCGc-GCCGUg -3' miRNA: 3'- cuUGUGGAg----UUGCGCGC-GCaaCGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 29504 | 0.67 | 0.590974 |
Target: 5'- cGAACGCCgcugcggcguccgUCGGCGCGCcaGCaGUgGCCGg -3' miRNA: 3'- -CUUGUGG-------------AGUUGCGCG--CG-CAaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 18440 | 0.66 | 0.625469 |
Target: 5'- uGAAC-CgCUCGAgGUGCGCGUgaagcaGCCGc -3' miRNA: 3'- -CUUGuG-GAGUUgCGCGCGCAa-----CGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 3340 | 0.66 | 0.636623 |
Target: 5'- -cGCGCCgcCGGCGcCGCGCGcgGUCGa -3' miRNA: 3'- cuUGUGGa-GUUGC-GCGCGCaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 10658 | 0.66 | 0.647773 |
Target: 5'- uGGACGCCgcgCAGacCGCGCGC---GCCGa -3' miRNA: 3'- -CUUGUGGa--GUU--GCGCGCGcaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 9700 | 0.66 | 0.68109 |
Target: 5'- -cGCACC-CGACGCGCGacaGUgcGUCGa -3' miRNA: 3'- cuUGUGGaGUUGCGCGCg--CAa-CGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 3708 | 0.66 | 0.68109 |
Target: 5'- cGACGCCaaugcCGCGCGCGUUGauaCGc -3' miRNA: 3'- cUUGUGGaguu-GCGCGCGCAACg--GCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 21558 | 0.66 | 0.68109 |
Target: 5'- aGAGCACUggccguucCAGCGC-CGCGUgcucGCCGc -3' miRNA: 3'- -CUUGUGGa-------GUUGCGcGCGCAa---CGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 3940 | 0.66 | 0.68109 |
Target: 5'- uAGCGCCUCGcACGCGCcagccaGCGagccuggcagGCCGUu -3' miRNA: 3'- cUUGUGGAGU-UGCGCG------CGCaa--------CGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 34916 | 0.66 | 0.670017 |
Target: 5'- cGAAUgucgACCUgUGAUGCGCGCGgaGCUGa -3' miRNA: 3'- -CUUG----UGGA-GUUGCGCGCGCaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 20352 | 0.66 | 0.670017 |
Target: 5'- -cGCACCUCgGGgGCGCGCaugGCUGa -3' miRNA: 3'- cuUGUGGAG-UUgCGCGCGcaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 16572 | 0.66 | 0.658908 |
Target: 5'- cGACGCCaaggcCGGCgGCGaCGCGUUcGCCGg -3' miRNA: 3'- cUUGUGGa----GUUG-CGC-GCGCAA-CGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 35986 | 0.66 | 0.647773 |
Target: 5'- gGAGCGCgCguaAugGCGCGCGc-GCCGc -3' miRNA: 3'- -CUUGUG-Gag-UugCGCGCGCaaCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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