miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24299 3' -57.8 NC_005263.2 + 9561 0.66 0.578537
Target:  5'- ---aGGUCGACaaagaacguguccagGCGCUGCGUGCcGUCc -3'
miRNA:   3'- cuagCUAGCUG---------------CGCGGCGCGCGcUAG- -5'
24299 3' -57.8 NC_005263.2 + 37843 0.66 0.542238
Target:  5'- --gCGGcgCGAUGCGaaGCGCaucGCGAUCg -3'
miRNA:   3'- cuaGCUa-GCUGCGCggCGCG---CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 41333 0.66 0.542238
Target:  5'- --gCGAcuUCGACGaggccgagcuCGCCcgGCGCGCGAUg -3'
miRNA:   3'- cuaGCU--AGCUGC----------GCGG--CGCGCGCUAg -5'
24299 3' -57.8 NC_005263.2 + 20973 0.66 0.574235
Target:  5'- cAUCGc-CGACGCgGCUGCGCGCc--- -3'
miRNA:   3'- cUAGCuaGCUGCG-CGGCGCGCGcuag -5'
24299 3' -57.8 NC_005263.2 + 6525 0.66 0.521236
Target:  5'- --gCGAaagCGGCGCGCauaCGCGCGAa- -3'
miRNA:   3'- cuaGCUa--GCUGCGCGgc-GCGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 17791 0.66 0.521236
Target:  5'- aAUCGAUCgucgucaaGACGCcgGCCGCGCccgGCGcuGUCg -3'
miRNA:   3'- cUAGCUAG--------CUGCG--CGGCGCG---CGC--UAG- -5'
24299 3' -57.8 NC_005263.2 + 18519 0.66 0.521236
Target:  5'- --gCGAUCGGCgGCGUCGacaccgcgaGCGCGuUCa -3'
miRNA:   3'- cuaGCUAGCUG-CGCGGCg--------CGCGCuAG- -5'
24299 3' -57.8 NC_005263.2 + 14437 0.66 0.531699
Target:  5'- --gCGA-CGGCGUGCgCGCGCGCc--- -3'
miRNA:   3'- cuaGCUaGCUGCGCG-GCGCGCGcuag -5'
24299 3' -57.8 NC_005263.2 + 18279 0.66 0.531699
Target:  5'- --cCGggCGAUGCGCuCGuCGUGCGcgCu -3'
miRNA:   3'- cuaGCuaGCUGCGCG-GC-GCGCGCuaG- -5'
24299 3' -57.8 NC_005263.2 + 28789 0.66 0.533801
Target:  5'- cAUCGAccaccgcacagcCGGCGgGCCGCGUuuccaagaacucgccGCGAUCa -3'
miRNA:   3'- cUAGCUa-----------GCUGCgCGGCGCG---------------CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 8388 0.66 0.521236
Target:  5'- ---aGGUCGACGCGgcCCGCGC-CGGc- -3'
miRNA:   3'- cuagCUAGCUGCGC--GGCGCGcGCUag -5'
24299 3' -57.8 NC_005263.2 + 22822 0.66 0.542238
Target:  5'- ---aGAUC-ACGCuGUCGCGCGCgcgGAUCg -3'
miRNA:   3'- cuagCUAGcUGCG-CGGCGCGCG---CUAG- -5'
24299 3' -57.8 NC_005263.2 + 24420 0.66 0.574235
Target:  5'- --cCGGUUGACGCaagGCGUGCGGUUa -3'
miRNA:   3'- cuaGCUAGCUGCGcggCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 6238 0.66 0.574235
Target:  5'- --cCGAUCGcuCGCgGCCaG-GCGCGGUCg -3'
miRNA:   3'- cuaGCUAGCu-GCG-CGG-CgCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 36250 0.66 0.563513
Target:  5'- -uUCGA-CGAaaugaaGCGCC-UGCGCGAUUa -3'
miRNA:   3'- cuAGCUaGCUg-----CGCGGcGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 35512 0.66 0.560306
Target:  5'- --gCGGUgacacUGGCGCGCCgacugcgcccggcgGCGCGCGggCg -3'
miRNA:   3'- cuaGCUA-----GCUGCGCGG--------------CGCGCGCuaG- -5'
24299 3' -57.8 NC_005263.2 + 10894 0.66 0.557105
Target:  5'- cGUCGugagCGGCGUaucGCCGCGCugggggaugccgcacGUGAUCg -3'
miRNA:   3'- cUAGCua--GCUGCG---CGGCGCG---------------CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 30583 0.66 0.552845
Target:  5'- --cCGcugCG-CGCGCUGUacaGCGCGAUCa -3'
miRNA:   3'- cuaGCua-GCuGCGCGGCG---CGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 6053 0.66 0.552845
Target:  5'- -uUCGuuggCGGCGCGCuucaCGCGCGcCGAc- -3'
miRNA:   3'- cuAGCua--GCUGCGCG----GCGCGC-GCUag -5'
24299 3' -57.8 NC_005263.2 + 30504 0.66 0.542238
Target:  5'- -uUUGAUCGucaGCGCGUCGUgaccccgcuGCGCGAg- -3'
miRNA:   3'- cuAGCUAGC---UGCGCGGCG---------CGCGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.