miRNA display CGI


Results 1 - 20 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24299 3' -57.8 NC_005263.2 + 666 0.67 0.469254
Target:  5'- aGAUCGAacgccucaUCGuaGCGCGCCuugccgaGCGCGcCGAUg -3'
miRNA:   3'- -CUAGCU--------AGC--UGCGCGG-------CGCGC-GCUAg -5'
24299 3' -57.8 NC_005263.2 + 698 0.66 0.552845
Target:  5'- aGcgCGAUCGuGC-CGCCGCcCGCGAg- -3'
miRNA:   3'- -CuaGCUAGC-UGcGCGGCGcGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 761 0.7 0.351199
Target:  5'- -uUCGG-CGACGCGCa--GCGCGAUg -3'
miRNA:   3'- cuAGCUaGCUGCGCGgcgCGCGCUAg -5'
24299 3' -57.8 NC_005263.2 + 1416 0.73 0.20749
Target:  5'- uGUCG-UCGGCGCGCgccgccuuggcUGCGCGCGAg- -3'
miRNA:   3'- cUAGCuAGCUGCGCG-----------GCGCGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 1626 0.67 0.48025
Target:  5'- gGGUCGAacgcgucgUCGGCgGCGUagcccuggaugCGCuGCGCGGUCg -3'
miRNA:   3'- -CUAGCU--------AGCUG-CGCG-----------GCG-CGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 2037 0.68 0.450569
Target:  5'- cAUCGAucacgUCGACGC-CCGCGCgguaguucGCGGUg -3'
miRNA:   3'- cUAGCU-----AGCUGCGcGGCGCG--------CGCUAg -5'
24299 3' -57.8 NC_005263.2 + 2248 0.69 0.365505
Target:  5'- -cUCGAacUUGccguaGCGCGCCGCGCgcucggccaagguuGCGGUCa -3'
miRNA:   3'- cuAGCU--AGC-----UGCGCGGCGCG--------------CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 2370 0.71 0.288591
Target:  5'- aGUUGAUCGACGCGgCguaacccaugacgGCGCcgGCGGUCg -3'
miRNA:   3'- cUAGCUAGCUGCGCgG-------------CGCG--CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 2492 0.69 0.376713
Target:  5'- --aCGAUCGACGCuGCCucgagaucGgGCGCGAc- -3'
miRNA:   3'- cuaGCUAGCUGCG-CGG--------CgCGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 2754 0.67 0.460353
Target:  5'- aGAUCG--CGGC-CGCCGUGC-CGGUCg -3'
miRNA:   3'- -CUAGCuaGCUGcGCGGCGCGcGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 3339 0.74 0.176964
Target:  5'- --gCGcgCcGCcgGCGCCGCGCGCGGUCg -3'
miRNA:   3'- cuaGCuaGcUG--CGCGGCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 3700 0.76 0.142504
Target:  5'- -uUCGAcgUCGACGCcaauGCCGCGCGCGu-- -3'
miRNA:   3'- cuAGCU--AGCUGCG----CGGCGCGCGCuag -5'
24299 3' -57.8 NC_005263.2 + 4082 0.7 0.319129
Target:  5'- aGUCGAaCGGUGCGuuGUGCGCGAc- -3'
miRNA:   3'- cUAGCUaGCUGCGCggCGCGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 4841 0.7 0.311463
Target:  5'- aGUCGGUUGcccguacgcGCGCGCCGUGC-CGAUg -3'
miRNA:   3'- cUAGCUAGC---------UGCGCGGCGCGcGCUAg -5'
24299 3' -57.8 NC_005263.2 + 5777 0.71 0.289308
Target:  5'- cGGUUGAuagUCGcgcACGCGCCGCuGCGCcGUCu -3'
miRNA:   3'- -CUAGCU---AGC---UGCGCGGCG-CGCGcUAG- -5'
24299 3' -57.8 NC_005263.2 + 6053 0.66 0.552845
Target:  5'- -uUCGuuggCGGCGCGCuucaCGCGCGcCGAc- -3'
miRNA:   3'- cuAGCua--GCUGCGCG----GCGCGC-GCUag -5'
24299 3' -57.8 NC_005263.2 + 6121 0.67 0.500558
Target:  5'- -cUUGAUCGGCcgguaUGUCgGUGCGCGAUCg -3'
miRNA:   3'- cuAGCUAGCUGc----GCGG-CGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 6238 0.66 0.574235
Target:  5'- --cCGAUCGcuCGCgGCCaG-GCGCGGUCg -3'
miRNA:   3'- cuaGCUAGCu-GCG-CGG-CgCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 6525 0.66 0.521236
Target:  5'- --gCGAaagCGGCGCGCauaCGCGCGAa- -3'
miRNA:   3'- cuaGCUa--GCUGCGCGgc-GCGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 6557 0.71 0.303937
Target:  5'- cAUCGccgccaCGGCGCGCCGCGCGUuuGcgCa -3'
miRNA:   3'- cUAGCua----GCUGCGCGGCGCGCG--CuaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.