miRNA display CGI


Results 1 - 20 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24299 3' -57.8 NC_005263.2 + 30610 1.09 0.000482
Target:  5'- uGAUCGAUCGACGCGCCGCGCGCGAUCa -3'
miRNA:   3'- -CUAGCUAGCUGCGCGGCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 25282 0.71 0.289308
Target:  5'- --cCGAUCcGCGCGCgCGacaGCGUGAUCu -3'
miRNA:   3'- cuaGCUAGcUGCGCG-GCg--CGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 4841 0.7 0.311463
Target:  5'- aGUCGGUUGcccguacgcGCGCGCCGUGC-CGAUg -3'
miRNA:   3'- cUAGCUAGC---------UGCGCGGCGCGcGCUAg -5'
24299 3' -57.8 NC_005263.2 + 20973 0.66 0.574235
Target:  5'- cAUCGc-CGACGCgGCUGCGCGCc--- -3'
miRNA:   3'- cUAGCuaGCUGCG-CGGCGCGCGcuag -5'
24299 3' -57.8 NC_005263.2 + 6615 0.75 0.150496
Target:  5'- -uUCGG-CGGCGCGCuCG-GCGCGGUCg -3'
miRNA:   3'- cuAGCUaGCUGCGCG-GCgCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 26353 0.75 0.163248
Target:  5'- cGUUGGUCGugGUcaUGCGCGCGAUCu -3'
miRNA:   3'- cUAGCUAGCugCGcgGCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 31749 0.73 0.20749
Target:  5'- --cCGAgCGACGCgGCCGCGCGCuucGUCu -3'
miRNA:   3'- cuaGCUaGCUGCG-CGGCGCGCGc--UAG- -5'
24299 3' -57.8 NC_005263.2 + 24035 0.73 0.213
Target:  5'- gGAUCGGUCGACGUGuCCGgguuCGCGCuGUUg -3'
miRNA:   3'- -CUAGCUAGCUGCGC-GGC----GCGCGcUAG- -5'
24299 3' -57.8 NC_005263.2 + 28111 0.72 0.261719
Target:  5'- uGUCGAUCGcaaGUGCCGCGCcgggGCGAa- -3'
miRNA:   3'- cUAGCUAGCug-CGCGGCGCG----CGCUag -5'
24299 3' -57.8 NC_005263.2 + 19114 0.71 0.289308
Target:  5'- --cCGGUCGGcCGCGCCGaGCGC-AUCg -3'
miRNA:   3'- cuaGCUAGCU-GCGCGGCgCGCGcUAG- -5'
24299 3' -57.8 NC_005263.2 + 39295 0.71 0.282203
Target:  5'- cGAgCGGcCGGCagGCGCaugCGCGCGCGAUCg -3'
miRNA:   3'- -CUaGCUaGCUG--CGCG---GCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 30211 0.72 0.255165
Target:  5'- --cUGAUCGGCGCGCCGC-CGgucgacUGAUCg -3'
miRNA:   3'- cuaGCUAGCUGCGCGGCGcGC------GCUAG- -5'
24299 3' -57.8 NC_005263.2 + 33413 0.8 0.072837
Target:  5'- cGUCGAUCGccuugaGCGCCGCGCGCGcgUa -3'
miRNA:   3'- cUAGCUAGCug----CGCGGCGCGCGCuaG- -5'
24299 3' -57.8 NC_005263.2 + 2370 0.71 0.288591
Target:  5'- aGUUGAUCGACGCGgCguaacccaugacgGCGCcgGCGGUCg -3'
miRNA:   3'- cUAGCUAGCUGCGCgG-------------CGCG--CGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 44646 0.8 0.072837
Target:  5'- uGAUCGAgcugcgccUCGAUGCGUCGCGCGCGccgaagaaGUCg -3'
miRNA:   3'- -CUAGCU--------AGCUGCGCGGCGCGCGC--------UAG- -5'
24299 3' -57.8 NC_005263.2 + 42880 0.73 0.213
Target:  5'- uGAUCGcGUCaauGGCGUGCCGCGCGCu--- -3'
miRNA:   3'- -CUAGC-UAG---CUGCGCGGCGCGCGcuag -5'
24299 3' -57.8 NC_005263.2 + 5777 0.71 0.289308
Target:  5'- cGGUUGAuagUCGcgcACGCGCCGCuGCGCcGUCu -3'
miRNA:   3'- -CUAGCU---AGC---UGCGCGGCG-CGCGcUAG- -5'
24299 3' -57.8 NC_005263.2 + 6557 0.71 0.303937
Target:  5'- cAUCGccgccaCGGCGCGCCGCGCGUuuGcgCa -3'
miRNA:   3'- cUAGCua----GCUGCGCGGCGCGCG--CuaG- -5'
24299 3' -57.8 NC_005263.2 + 28902 0.75 0.14645
Target:  5'- gGAUCGuUCgGAUGCGCCGCGC-UGAUCc -3'
miRNA:   3'- -CUAGCuAG-CUGCGCGGCGCGcGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 15352 0.74 0.196839
Target:  5'- cGUCGGUCGcauUGCGCCGCGCaaGCGGc- -3'
miRNA:   3'- cUAGCUAGCu--GCGCGGCGCG--CGCUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.