miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24299 3' -57.8 NC_005263.2 + 30610 1.09 0.000482
Target:  5'- uGAUCGAUCGACGCGCCGCGCGCGAUCa -3'
miRNA:   3'- -CUAGCUAGCUGCGCGGCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 33413 0.8 0.072837
Target:  5'- cGUCGAUCGccuugaGCGCCGCGCGCGcgUa -3'
miRNA:   3'- cUAGCUAGCug----CGCGGCGCGCGCuaG- -5'
24299 3' -57.8 NC_005263.2 + 44646 0.8 0.072837
Target:  5'- uGAUCGAgcugcgccUCGAUGCGUCGCGCGCGccgaagaaGUCg -3'
miRNA:   3'- -CUAGCU--------AGCUGCGCGGCGCGCGC--------UAG- -5'
24299 3' -57.8 NC_005263.2 + 15182 0.79 0.083939
Target:  5'- uGAUCGAcgCGAgCGCGCCGCGCGaCG-UCg -3'
miRNA:   3'- -CUAGCUa-GCU-GCGCGGCGCGC-GCuAG- -5'
24299 3' -57.8 NC_005263.2 + 44550 0.78 0.105117
Target:  5'- uGGUCGGcCGACGCGCUGCGCGgcacugcgcUGAUCc -3'
miRNA:   3'- -CUAGCUaGCUGCGCGGCGCGC---------GCUAG- -5'
24299 3' -57.8 NC_005263.2 + 27607 0.78 0.105117
Target:  5'- --aCGAcUCGACGUGCgGCGCGaCGGUCg -3'
miRNA:   3'- cuaGCU-AGCUGCGCGgCGCGC-GCUAG- -5'
24299 3' -57.8 NC_005263.2 + 17493 0.77 0.117505
Target:  5'- --cUGAUCG-CGCGCgGCGCGuCGAUCg -3'
miRNA:   3'- cuaGCUAGCuGCGCGgCGCGC-GCUAG- -5'
24299 3' -57.8 NC_005263.2 + 3700 0.76 0.142504
Target:  5'- -uUCGAcgUCGACGCcaauGCCGCGCGCGu-- -3'
miRNA:   3'- cuAGCU--AGCUGCG----CGGCGCGCGCuag -5'
24299 3' -57.8 NC_005263.2 + 28902 0.75 0.14645
Target:  5'- gGAUCGuUCgGAUGCGCCGCGC-UGAUCc -3'
miRNA:   3'- -CUAGCuAG-CUGCGCGGCGCGcGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 6615 0.75 0.150496
Target:  5'- -uUCGG-CGGCGCGCuCG-GCGCGGUCg -3'
miRNA:   3'- cuAGCUaGCUGCGCG-GCgCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 26353 0.75 0.163248
Target:  5'- cGUUGGUCGugGUcaUGCGCGCGAUCu -3'
miRNA:   3'- cUAGCUAGCugCGcgGCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 3339 0.74 0.176964
Target:  5'- --gCGcgCcGCcgGCGCCGCGCGCGGUCg -3'
miRNA:   3'- cuaGCuaGcUG--CGCGGCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 15352 0.74 0.196839
Target:  5'- cGUCGGUCGcauUGCGCCGCGCaaGCGGc- -3'
miRNA:   3'- cUAGCUAGCu--GCGCGGCGCG--CGCUag -5'
24299 3' -57.8 NC_005263.2 + 8804 0.73 0.206946
Target:  5'- cGAUCGcgCGcgcAUGCGCCugccggccgcucgGCGUGCGAUCa -3'
miRNA:   3'- -CUAGCuaGC---UGCGCGG-------------CGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 31749 0.73 0.20749
Target:  5'- --cCGAgCGACGCgGCCGCGCGCuucGUCu -3'
miRNA:   3'- cuaGCUaGCUGCG-CGGCGCGCGc--UAG- -5'
24299 3' -57.8 NC_005263.2 + 1416 0.73 0.20749
Target:  5'- uGUCG-UCGGCGCGCgccgccuuggcUGCGCGCGAg- -3'
miRNA:   3'- cUAGCuAGCUGCGCG-----------GCGCGCGCUag -5'
24299 3' -57.8 NC_005263.2 + 24035 0.73 0.213
Target:  5'- gGAUCGGUCGACGUGuCCGgguuCGCGCuGUUg -3'
miRNA:   3'- -CUAGCUAGCUGCGC-GGC----GCGCGcUAG- -5'
24299 3' -57.8 NC_005263.2 + 42880 0.73 0.213
Target:  5'- uGAUCGcGUCaauGGCGUGCCGCGCGCu--- -3'
miRNA:   3'- -CUAGC-UAG---CUGCGCGGCGCGCGcuag -5'
24299 3' -57.8 NC_005263.2 + 30359 0.72 0.254517
Target:  5'- cGAUCaGGUCGuCGUGCagcgcuucggggaUGUGCGCGAUCg -3'
miRNA:   3'- -CUAG-CUAGCuGCGCG-------------GCGCGCGCUAG- -5'
24299 3' -57.8 NC_005263.2 + 23417 0.72 0.255165
Target:  5'- cGUCGAUCaACGCGCUcauGCGCucgauguucgGCGAUCg -3'
miRNA:   3'- cUAGCUAGcUGCGCGG---CGCG----------CGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.