miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24312 3' -48.9 NC_005263.2 + 47939 0.68 0.885247
Target:  5'- gCGAgAAGCGUGGGAgGGGauugugagugaCACGACg -3'
miRNA:   3'- gGUUgUUCGUACUCUgCUUg----------GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 47764 0.67 0.938253
Target:  5'- gCCGACGGGCAUuucGGGCGG--UACGGCc -3'
miRNA:   3'- -GGUUGUUCGUAc--UCUGCUugGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 45472 0.74 0.603745
Target:  5'- gCCGGCAAGCGc--GAUGAACCGCG-Cg -3'
miRNA:   3'- -GGUUGUUCGUacuCUGCUUGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 45184 0.69 0.877287
Target:  5'- gCAuucGCGAGCAUGGcGGCcAACUAUGGCg -3'
miRNA:   3'- gGU---UGUUCGUACU-CUGcUUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 44886 0.68 0.89292
Target:  5'- cCCGGCGu-CAUcGGGGCGGGCgGCGGCc -3'
miRNA:   3'- -GGUUGUucGUA-CUCUGCUUGgUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 44501 0.66 0.955787
Target:  5'- aCCGACGgcGGCAUccuggccgucaccGAGgucGCGAagaucaaggaguacGCCGCGACg -3'
miRNA:   3'- -GGUUGU--UCGUA-------------CUC---UGCU--------------UGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 43471 0.66 0.957499
Target:  5'- gUCAGCGGGCGcguuuggGAGuACGAACUACa-- -3'
miRNA:   3'- -GGUUGUUCGUa------CUC-UGCUUGGUGcug -5'
24312 3' -48.9 NC_005263.2 + 43403 0.66 0.94847
Target:  5'- aCCAAgAAGCAcGAcGACaGAUCGCGAa -3'
miRNA:   3'- -GGUUgUUCGUaCU-CUGcUUGGUGCUg -5'
24312 3' -48.9 NC_005263.2 + 40448 0.73 0.677684
Target:  5'- aCAGCGGGCGUGuGcgcgaugcguuuauuGCGAaagGCCAUGACg -3'
miRNA:   3'- gGUUGUUCGUACuC---------------UGCU---UGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 40017 0.71 0.773291
Target:  5'- uCCGAUcuGAGCA--AGACGAACCaauACGGCc -3'
miRNA:   3'- -GGUUG--UUCGUacUCUGCUUGG---UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 39881 0.68 0.89292
Target:  5'- uCCAGgAAGUGUucaAGACGAACCccAUGACg -3'
miRNA:   3'- -GGUUgUUCGUAc--UCUGCUUGG--UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 39699 0.67 0.945532
Target:  5'- -gGGCGAGCGcGAGcuggaaauggccggcGCGGGCCGCGuCg -3'
miRNA:   3'- ggUUGUUCGUaCUC---------------UGCUUGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 38958 1.14 0.002064
Target:  5'- gCCAACAAGCAUGAGACGAACCACGACg -3'
miRNA:   3'- -GGUUGUUCGUACUCUGCUUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 38776 0.68 0.914168
Target:  5'- aCGAUccGCAUGAcGAUGGaagcgGCCACGAg -3'
miRNA:   3'- gGUUGuuCGUACU-CUGCU-----UGGUGCUg -5'
24312 3' -48.9 NC_005263.2 + 38113 0.67 0.920648
Target:  5'- cCUGGCGcGCAaGAcGGCGAACCggACGGCg -3'
miRNA:   3'- -GGUUGUuCGUaCU-CUGCUUGG--UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 37921 0.68 0.900301
Target:  5'- aCAGCGGGCGc-AGGCGcGCCGcCGGCa -3'
miRNA:   3'- gGUUGUUCGUacUCUGCuUGGU-GCUG- -5'
24312 3' -48.9 NC_005263.2 + 37841 0.68 0.914168
Target:  5'- gCCGACGcGGCGUuucGCGAACCGCGuGCg -3'
miRNA:   3'- -GGUUGU-UCGUAcucUGCUUGGUGC-UG- -5'
24312 3' -48.9 NC_005263.2 + 37644 0.73 0.638445
Target:  5'- aCCuGCuuGUAUGGGACGGGCaCGCGAUc -3'
miRNA:   3'- -GGuUGuuCGUACUCUGCUUG-GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 36569 0.75 0.569284
Target:  5'- gCGGCAAG-GUGAcGACGAACCGCGcCg -3'
miRNA:   3'- gGUUGUUCgUACU-CUGCUUGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 35538 0.66 0.961581
Target:  5'- cCCGGCGGcGCGc-GGGCGGgcGCUACGGCg -3'
miRNA:   3'- -GGUUGUU-CGUacUCUGCU--UGGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.