miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24313 3' -56.1 NC_005263.2 + 46531 0.67 0.5497
Target:  5'- aGCAUGgGUaucGACGGCAcgCuGUcgGCCGg -3'
miRNA:   3'- -UGUACgCG---CUGCCGUa-GcCAuaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 46151 0.66 0.637514
Target:  5'- aGCAgaucGaCGCGGuugcCGGCGUCGccgGUGCCGg -3'
miRNA:   3'- -UGUa---C-GCGCU----GCCGUAGCca-UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 45475 0.68 0.52824
Target:  5'- gGCAaGCGCGAUGaaccGCG-CGGUcgGCCu -3'
miRNA:   3'- -UGUaCGCGCUGC----CGUaGCCAuaCGGc -5'
24313 3' -56.1 NC_005263.2 + 45430 0.71 0.362792
Target:  5'- cGCcgGCGCGACacugcaGGCugcCGGUGUcGCCGc -3'
miRNA:   3'- -UGuaCGCGCUG------CCGua-GCCAUA-CGGC- -5'
24313 3' -56.1 NC_005263.2 + 44065 0.68 0.486323
Target:  5'- -gGUGCuGCGGCGGCAgCGGg--GCUa -3'
miRNA:   3'- ugUACG-CGCUGCCGUaGCCauaCGGc -5'
24313 3' -56.1 NC_005263.2 + 42003 0.68 0.507098
Target:  5'- cACAUGaCGUGcCGGCAgugCGGccgGCCGc -3'
miRNA:   3'- -UGUAC-GCGCuGCCGUa--GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 41246 0.68 0.517626
Target:  5'- uCGUGCGCGAgGGCuaccugucgcCGGUcGUGUCGc -3'
miRNA:   3'- uGUACGCGCUgCCGua--------GCCA-UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 41156 0.66 0.626455
Target:  5'- gGCGUuCGCG-CGGCGUgGGcg-GCCGu -3'
miRNA:   3'- -UGUAcGCGCuGCCGUAgCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 39162 1.09 0.000702
Target:  5'- gACAUGCGCGACGGCAUCGGUAUGCCGa -3'
miRNA:   3'- -UGUACGCGCUGCCGUAGCCAUACGGC- -5'
24313 3' -56.1 NC_005263.2 + 37398 0.73 0.269609
Target:  5'- gGC-UGCGCGACGuGCAUCGcGUcgcgcgGCCGu -3'
miRNA:   3'- -UGuACGCGCUGC-CGUAGC-CAua----CGGC- -5'
24313 3' -56.1 NC_005263.2 + 37373 0.7 0.371496
Target:  5'- cGCGUGCGCGACuGCAUCu---UGUCGa -3'
miRNA:   3'- -UGUACGCGCUGcCGUAGccauACGGC- -5'
24313 3' -56.1 NC_005263.2 + 35757 0.69 0.446051
Target:  5'- cGCggGCGCGguuacuGCGGCuggCGGcGUGCCa -3'
miRNA:   3'- -UGuaCGCGC------UGCCGua-GCCaUACGGc -5'
24313 3' -56.1 NC_005263.2 + 33336 0.68 0.517626
Target:  5'- gGCGUGCGCGuCgGGCAgcuuugcgacuUCGGcauaGUGCUGa -3'
miRNA:   3'- -UGUACGCGCuG-CCGU-----------AGCCa---UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 32898 0.67 0.5497
Target:  5'- uCGUG-GCGuCGGCGUCGGcg-GCCc -3'
miRNA:   3'- uGUACgCGCuGCCGUAGCCauaCGGc -5'
24313 3' -56.1 NC_005263.2 + 32748 0.67 0.593346
Target:  5'- aGCGUGCGCaguacGACGuucagcgccGCGUCGGgguucucgGUGUCGg -3'
miRNA:   3'- -UGUACGCG-----CUGC---------CGUAGCCa-------UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 32084 0.74 0.224145
Target:  5'- aACGUGCgucacguGCGGCGGCGUCGGUGcGaUCGa -3'
miRNA:   3'- -UGUACG-------CGCUGCCGUAGCCAUaC-GGC- -5'
24313 3' -56.1 NC_005263.2 + 30930 0.67 0.538934
Target:  5'- gGCGUacGCGCGAgcugcgcauuCGGCuucUCGGccGUGCCGa -3'
miRNA:   3'- -UGUA--CGCGCU----------GCCGu--AGCCa-UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 30451 0.67 0.538934
Target:  5'- aGCGUgaGCGCGGCGGCcuUCGcGUugcGCCa -3'
miRNA:   3'- -UGUA--CGCGCUGCCGu-AGC-CAua-CGGc -5'
24313 3' -56.1 NC_005263.2 + 30409 0.66 0.604361
Target:  5'- ---aGCGCGAcCGGCugcagcagGUCGGUGcgGUCGa -3'
miRNA:   3'- uguaCGCGCU-GCCG--------UAGCCAUa-CGGC- -5'
24313 3' -56.1 NC_005263.2 + 29355 0.68 0.517626
Target:  5'- -gGUGCGCGAgcaGGCGcCGGUAacccggcGCCGa -3'
miRNA:   3'- ugUACGCGCUg--CCGUaGCCAUa------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.