miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 3' -53.9 NC_005263.2 + 46309 0.69 0.538588
Target:  5'- cAGGAACugacgAUCGGCUCGAaCGCCGUGAu -3'
miRNA:   3'- uUUCUUG-----UGGUUGGGCUaGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 9754 0.68 0.639171
Target:  5'- cGAGGcGCAUUucgCCGGUCGCCGCGu -3'
miRNA:   3'- -UUUCuUGUGGuugGGCUAGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 15568 0.68 0.616609
Target:  5'- ---cGugGCCGGCCUGccgacaGUCGCCGCGu -3'
miRNA:   3'- uuucUugUGGUUGGGC------UAGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 30201 0.68 0.594104
Target:  5'- cGGGGcGCGCCGAUCUGcgCGCCGUu- -3'
miRNA:   3'- -UUUCuUGUGGUUGGGCuaGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 38544 0.69 0.582897
Target:  5'- cGAGcGCGCC-GCCUGGcaaGCCGCGAg -3'
miRNA:   3'- uUUCuUGUGGuUGGGCUag-CGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 15386 0.69 0.582897
Target:  5'- --cGggUAgCGACCCGGcCGCCGUGc -3'
miRNA:   3'- uuuCuuGUgGUUGGGCUaGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 28368 0.69 0.5573
Target:  5'- -cAGcGCGCCAGCgCCGAUCGCauagaacuggaucaUGCGGa -3'
miRNA:   3'- uuUCuUGUGGUUG-GGCUAGCG--------------GCGCU- -5'
24316 3' -53.9 NC_005263.2 + 34628 0.69 0.549571
Target:  5'- --cGAACAacuacaacucgaUCAACCCGGUCGCgGaCGAu -3'
miRNA:   3'- uuuCUUGU------------GGUUGGGCUAGCGgC-GCU- -5'
24316 3' -53.9 NC_005263.2 + 18813 0.69 0.549571
Target:  5'- --cGcAUGCCGACCCGGcCGCCGUGc -3'
miRNA:   3'- uuuCuUGUGGUUGGGCUaGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 28230 0.67 0.661705
Target:  5'- ----uGCAUCGGCCgCGcUCGCCGCGc -3'
miRNA:   3'- uuucuUGUGGUUGG-GCuAGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 40892 0.67 0.684124
Target:  5'- ---uGGCGCCGucGCCUGAUCGCUG-GAa -3'
miRNA:   3'- uuucUUGUGGU--UGGGCUAGCGGCgCU- -5'
24316 3' -53.9 NC_005263.2 + 24398 0.67 0.695261
Target:  5'- gGGAGAACAUCGcgcaagcgACCCGGUUGaCGCa- -3'
miRNA:   3'- -UUUCUUGUGGU--------UGGGCUAGCgGCGcu -5'
24316 3' -53.9 NC_005263.2 + 8132 0.66 0.760307
Target:  5'- --cGAGCGCUuGCUCGAUCGCuuCGCc- -3'
miRNA:   3'- uuuCUUGUGGuUGGGCUAGCG--GCGcu -5'
24316 3' -53.9 NC_005263.2 + 6361 0.66 0.749739
Target:  5'- --uGAucGCGCCGugccGCCCGAagUUGCCGCc- -3'
miRNA:   3'- uuuCU--UGUGGU----UGGGCU--AGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 35563 0.66 0.739045
Target:  5'- ---cGGCGCCG--CCGGcCGCCGCGAa -3'
miRNA:   3'- uuucUUGUGGUugGGCUaGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 19784 0.66 0.739045
Target:  5'- --cGGGCucggcgGCCGACCaGAUucgCGCCGCGAu -3'
miRNA:   3'- uuuCUUG------UGGUUGGgCUA---GCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 42721 0.66 0.735814
Target:  5'- --cGAACAggucaacgccggcuUCAACCCGAUCGaCC-CGAa -3'
miRNA:   3'- uuuCUUGU--------------GGUUGGGCUAGC-GGcGCU- -5'
24316 3' -53.9 NC_005263.2 + 29400 0.66 0.728238
Target:  5'- gAAAGggUugCcGCCCGcgCcuGCCGCGc -3'
miRNA:   3'- -UUUCuuGugGuUGGGCuaG--CGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 16475 0.66 0.728238
Target:  5'- --cGAACACCGAgaCGGcgcugCGCCGCGc -3'
miRNA:   3'- uuuCUUGUGGUUggGCUa----GCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 27307 0.66 0.70523
Target:  5'- -cAGaAAUACCAcggcgcgACCCGAcgCGCCGaCGAu -3'
miRNA:   3'- uuUC-UUGUGGU-------UGGGCUa-GCGGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.