miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 5' -57.2 NC_005263.2 + 24555 0.69 0.43006
Target:  5'- gGGCGGCGGCGgcugcgccacGGUCGgCacgCCgaauaucaugucGGGCGCa -3'
miRNA:   3'- -CCGCCGCCGU----------UCAGC-Ga--GGa-----------CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 25017 0.67 0.522237
Target:  5'- uGCGGUGGC-GGUgGCUgC-GGugGCg -3'
miRNA:   3'- cCGCCGCCGuUCAgCGAgGaCUugCG- -5'
24316 5' -57.2 NC_005263.2 + 35540 0.67 0.500442
Target:  5'- cGGCGGCGcGCGGGcgggCGCUacggcgccgccggCCgccgcGAACGUg -3'
miRNA:   3'- -CCGCCGC-CGUUCa---GCGA-------------GGa----CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 45493 0.68 0.491224
Target:  5'- cGCGGuCGGCcuGUCGCgcaaUUGGGCGa -3'
miRNA:   3'- cCGCC-GCCGuuCAGCGag--GACUUGCg -5'
24316 5' -57.2 NC_005263.2 + 6327 0.68 0.481075
Target:  5'- -cCGGCGcGCGAGUCGC-CC---GCGCc -3'
miRNA:   3'- ccGCCGC-CGUUCAGCGaGGacuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 22385 0.68 0.481075
Target:  5'- cGGCGGCaucgGGCAGGcCGCgaaCgu-ACGCg -3'
miRNA:   3'- -CCGCCG----CCGUUCaGCGag-GacuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 43951 0.68 0.467041
Target:  5'- cGCGGCGcGCuguacacgaacUCGUUCCUGAccgucuACGCg -3'
miRNA:   3'- cCGCCGC-CGuuc--------AGCGAGGACU------UGCG- -5'
24316 5' -57.2 NC_005263.2 + 30417 0.68 0.441555
Target:  5'- cGGCuGCaGCAGGUCGgUgCggucGAGCGCg -3'
miRNA:   3'- -CCGcCGcCGUUCAGCgAgGa---CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 32097 0.69 0.431964
Target:  5'- uGCGGCGGC--GUCGgUgCgaucGAGCGCu -3'
miRNA:   3'- cCGCCGCCGuuCAGCgAgGa---CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 901 0.67 0.53169
Target:  5'- cGGCGGUcgccgccGGCGGGUUaCUCgUcGACGCa -3'
miRNA:   3'- -CCGCCG-------CCGUUCAGcGAGgAcUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 47923 0.66 0.553978
Target:  5'- gGGCgcacgGGCaGCGGGcUCGC-CCcGGGCGCg -3'
miRNA:   3'- -CCG-----CCGcCGUUC-AGCGaGGaCUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 18165 0.66 0.558256
Target:  5'- cGGCGGCGGCGuugGcggcaucgucuacguGUCGaaCCguagUGAAUGCg -3'
miRNA:   3'- -CCGCCGCCGU---U---------------CAGCgaGG----ACUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 17756 0.66 0.607992
Target:  5'- cGGCGGCaGCGcGgccgCGCUCg-GcACGCg -3'
miRNA:   3'- -CCGCCGcCGUuCa---GCGAGgaCuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 1487 0.66 0.607992
Target:  5'- aGGCGcucGCGGCAcucGGUUuCUUUcGAGCGCa -3'
miRNA:   3'- -CCGC---CGCCGU---UCAGcGAGGaCUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 10871 0.66 0.586266
Target:  5'- cGGCGGaacuCGGCAccGGcgCGCgUCgUGAGCGg -3'
miRNA:   3'- -CCGCC----GCCGU--UCa-GCG-AGgACUUGCg -5'
24316 5' -57.2 NC_005263.2 + 35959 0.66 0.575455
Target:  5'- cGCuGCGuGCAAGgCGCUcgaccgCCUgGAGCGCg -3'
miRNA:   3'- cCGcCGC-CGUUCaGCGA------GGA-CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 15263 0.66 0.575455
Target:  5'- uGCuGCGGCuuGUCGCggCgCUGAaggGCGCc -3'
miRNA:   3'- cCGcCGCCGuuCAGCGa-G-GACU---UGCG- -5'
24316 5' -57.2 NC_005263.2 + 31262 0.66 0.575455
Target:  5'- cGCGGCgccgGGCAGGUCGaagUgCUGu-CGCa -3'
miRNA:   3'- cCGCCG----CCGUUCAGCg--AgGACuuGCG- -5'
24316 5' -57.2 NC_005263.2 + 10400 0.66 0.575455
Target:  5'- cGGcCGGCGaGCGGGUCcggcgcgcGUUCaacGAACGCc -3'
miRNA:   3'- -CC-GCCGC-CGUUCAG--------CGAGga-CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 10155 0.66 0.564689
Target:  5'- aGGCGGgCaGCuuggcGUCGC-CgaGAGCGCg -3'
miRNA:   3'- -CCGCC-GcCGuu---CAGCGaGgaCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.