miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 5' -56.8 NC_005263.2 + 42207 0.66 0.592717
Target:  5'- cGCGCCGGgcGCUGuuGUGCuuGAUAa- -3'
miRNA:   3'- aCGCGGUCaaCGGC--CACGugCUGUac -5'
24318 5' -56.8 NC_005263.2 + 40979 0.66 0.592717
Target:  5'- cGaCGCCAca-GUCGGUcGCACGGCAg- -3'
miRNA:   3'- aC-GCGGUcaaCGGCCA-CGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 24850 0.66 0.58169
Target:  5'- gGUGCCGGUgcgccaGCCGGcgGCuACGGCc-- -3'
miRNA:   3'- aCGCGGUCAa-----CGGCCa-CG-UGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 32285 0.66 0.58169
Target:  5'- cGCGCCAGgucggaGCCGGU-CuuGACGa- -3'
miRNA:   3'- aCGCGGUCaa----CGGCCAcGugCUGUac -5'
24318 5' -56.8 NC_005263.2 + 45796 0.66 0.58169
Target:  5'- -cCGCCAGUucaacgcgggcgUGCCGGccacggcGCACGACcUGc -3'
miRNA:   3'- acGCGGUCA------------ACGGCCa------CGUGCUGuAC- -5'
24318 5' -56.8 NC_005263.2 + 47810 0.66 0.570706
Target:  5'- gGCGCUuGggGCUucauuaucgGGUGCGCGGCuAUGc -3'
miRNA:   3'- aCGCGGuCaaCGG---------CCACGUGCUG-UAC- -5'
24318 5' -56.8 NC_005263.2 + 19806 0.66 0.570706
Target:  5'- gGUGCCGGUcgcacgGCCGGUacuGCACaAgGUGa -3'
miRNA:   3'- aCGCGGUCAa-----CGGCCA---CGUGcUgUAC- -5'
24318 5' -56.8 NC_005263.2 + 34715 0.66 0.566326
Target:  5'- cGCGCCugcacacgaucguGUcccgGCCGGUagGCGACAUGc -3'
miRNA:   3'- aCGCGGu------------CAa---CGGCCAcgUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 19902 0.66 0.559773
Target:  5'- cGUGCCuGUgaacGCCGGca-ACGGCAUGc -3'
miRNA:   3'- aCGCGGuCAa---CGGCCacgUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 29367 0.66 0.559773
Target:  5'- gGCGCCGGUaacCCGGcGC-CGACGc- -3'
miRNA:   3'- aCGCGGUCAac-GGCCaCGuGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 10390 0.66 0.557593
Target:  5'- cGCGCCGGgccgGCCGGcgagcggguccgGCGCG-CGUu -3'
miRNA:   3'- aCGCGGUCaa--CGGCCa-----------CGUGCuGUAc -5'
24318 5' -56.8 NC_005263.2 + 27380 0.66 0.548899
Target:  5'- cGCGgCGGcgGCCGGcGCGCuGACcgGc -3'
miRNA:   3'- aCGCgGUCaaCGGCCaCGUG-CUGuaC- -5'
24318 5' -56.8 NC_005263.2 + 11897 0.66 0.548899
Target:  5'- gGCGCCGGgcGCCuGcGCGCuGGCGUc -3'
miRNA:   3'- aCGCGGUCaaCGGcCaCGUG-CUGUAc -5'
24318 5' -56.8 NC_005263.2 + 3156 0.66 0.538092
Target:  5'- --gGCCAGcugGCCGGgcUGCACgGACGUa -3'
miRNA:   3'- acgCGGUCaa-CGGCC--ACGUG-CUGUAc -5'
24318 5' -56.8 NC_005263.2 + 26632 0.66 0.538092
Target:  5'- gUGCGCCGGauUUGCCaGUGgCGCcGCAg- -3'
miRNA:   3'- -ACGCGGUC--AACGGcCAC-GUGcUGUac -5'
24318 5' -56.8 NC_005263.2 + 92 0.66 0.538092
Target:  5'- aGCGCCuGcccGCCGGUGC-CGGuaguCGUGu -3'
miRNA:   3'- aCGCGGuCaa-CGGCCACGuGCU----GUAC- -5'
24318 5' -56.8 NC_005263.2 + 46173 0.66 0.538092
Target:  5'- cGuCGCCGG-UGCCGGcGCGCu-CGUGc -3'
miRNA:   3'- aC-GCGGUCaACGGCCaCGUGcuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 37374 0.66 0.537015
Target:  5'- aUGCGCUcgAGUcUGCgucgcccUGGcUGCGCGACGUGc -3'
miRNA:   3'- -ACGCGG--UCA-ACG-------GCC-ACGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 37708 0.66 0.533789
Target:  5'- cGCGCCGGacccgcucgccgGCCGGcccgGCGCGugGc- -3'
miRNA:   3'- aCGCGGUCaa----------CGGCCa---CGUGCugUac -5'
24318 5' -56.8 NC_005263.2 + 9127 0.67 0.527358
Target:  5'- aGCGgCGaUUGCCGGU-CGCGuCGUGg -3'
miRNA:   3'- aCGCgGUcAACGGCCAcGUGCuGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.