miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 5' -56.8 NC_005263.2 + 24705 0.7 0.361453
Target:  5'- cGCGCCGaacgUGCCGGgcgGCGCaGGCGg- -3'
miRNA:   3'- aCGCGGUca--ACGGCCa--CGUG-CUGUac -5'
24318 5' -56.8 NC_005263.2 + 2654 0.67 0.516706
Target:  5'- cGCGCCGG--GCUcgaGGUGCA-GGCGUGc -3'
miRNA:   3'- aCGCGGUCaaCGG---CCACGUgCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 46838 0.67 0.495669
Target:  5'- cGCGCCAGgcggcgcGCCaaGGaGCACGuCAUGc -3'
miRNA:   3'- aCGCGGUCaa-----CGG--CCaCGUGCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 9971 0.68 0.452833
Target:  5'- gUGCGaCCAG-UGCCGGgcaggccguucaGCAUGACGa- -3'
miRNA:   3'- -ACGC-GGUCaACGGCCa-----------CGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 8817 0.69 0.415875
Target:  5'- aUGCGCC---UGCCGGccGCuCGGCGUGc -3'
miRNA:   3'- -ACGCGGucaACGGCCa-CGuGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 9082 0.69 0.39626
Target:  5'- cGUGCCAGUUcgggucgaucgGCCGGUuCACGaacacggGCAUGa -3'
miRNA:   3'- aCGCGGUCAA-----------CGGCCAcGUGC-------UGUAC- -5'
24318 5' -56.8 NC_005263.2 + 13058 0.69 0.385322
Target:  5'- aUGUGCuCGGUuucacgggcgugucUGCCGGUGUcggACGGCAg- -3'
miRNA:   3'- -ACGCG-GUCA--------------ACGGCCACG---UGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 9765 0.69 0.379034
Target:  5'- -uCGCCGGUcGCCGcGUGCACGGuCGc- -3'
miRNA:   3'- acGCGGUCAaCGGC-CACGUGCU-GUac -5'
24318 5' -56.8 NC_005263.2 + 30303 0.69 0.379034
Target:  5'- aGCGCCGGgcgcgGCCGGcGUcuugACGACGa- -3'
miRNA:   3'- aCGCGGUCaa---CGGCCaCG----UGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 38574 0.67 0.516706
Target:  5'- cGCGUCGGUcgcUGCCGc-GCACGGCc-- -3'
miRNA:   3'- aCGCGGUCA---ACGGCcaCGUGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 41815 0.67 0.516706
Target:  5'- cGCGCCGGUguUGCUGuuUGCGCaGACGc- -3'
miRNA:   3'- aCGCGGUCA--ACGGCc-ACGUG-CUGUac -5'
24318 5' -56.8 NC_005263.2 + 9127 0.67 0.527358
Target:  5'- aGCGgCGaUUGCCGGU-CGCGuCGUGg -3'
miRNA:   3'- aCGCgGUcAACGGCCAcGUGCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 45796 0.66 0.58169
Target:  5'- -cCGCCAGUucaacgcgggcgUGCCGGccacggcGCACGACcUGc -3'
miRNA:   3'- acGCGGUCA------------ACGGCCa------CGUGCUGuAC- -5'
24318 5' -56.8 NC_005263.2 + 24850 0.66 0.58169
Target:  5'- gGUGCCGGUgcgccaGCCGGcgGCuACGGCc-- -3'
miRNA:   3'- aCGCGGUCAa-----CGGCCa-CG-UGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 34715 0.66 0.566326
Target:  5'- cGCGCCugcacacgaucguGUcccgGCCGGUagGCGACAUGc -3'
miRNA:   3'- aCGCGGu------------CAa---CGGCCAcgUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 29367 0.66 0.559773
Target:  5'- gGCGCCGGUaacCCGGcGC-CGACGc- -3'
miRNA:   3'- aCGCGGUCAac-GGCCaCGuGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 19902 0.66 0.559773
Target:  5'- cGUGCCuGUgaacGCCGGca-ACGGCAUGc -3'
miRNA:   3'- aCGCGGuCAa---CGGCCacgUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 10390 0.66 0.557593
Target:  5'- cGCGCCGGgccgGCCGGcgagcggguccgGCGCG-CGUu -3'
miRNA:   3'- aCGCGGUCaa--CGGCCa-----------CGUGCuGUAc -5'
24318 5' -56.8 NC_005263.2 + 27380 0.66 0.548899
Target:  5'- cGCGgCGGcgGCCGGcGCGCuGACcgGc -3'
miRNA:   3'- aCGCgGUCaaCGGCCaCGUG-CUGuaC- -5'
24318 5' -56.8 NC_005263.2 + 46173 0.66 0.538092
Target:  5'- cGuCGCCGG-UGCCGGcGCGCu-CGUGc -3'
miRNA:   3'- aC-GCGGUCaACGGCCaCGUGcuGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.