Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24319 | 5' | -53.9 | NC_005263.2 | + | 17582 | 0.66 | 0.775669 |
Target: 5'- --cACGAacGgcGGCGGCCaaGGCgCGCAGGg -3' miRNA: 3'- agaUGCU--CuuUCGCUGG--CCG-GCGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 4656 | 0.66 | 0.775669 |
Target: 5'- --gGCGAc-GGGCaGGCCGGCgCGCGGGu -3' miRNA: 3'- agaUGCUcuUUCG-CUGGCCG-GCGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 34690 | 0.66 | 0.765376 |
Target: 5'- ---cCGGGAucaAGGCG-CCGGCCGUg-- -3' miRNA: 3'- agauGCUCU---UUCGCuGGCCGGCGuuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 47444 | 0.66 | 0.754942 |
Target: 5'- gCUACGAuGAGGCGuucgauCUGGCCgGCAc- -3' miRNA: 3'- aGAUGCUcUUUCGCu-----GGCCGG-CGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 20430 | 0.66 | 0.754942 |
Target: 5'- --cGCGcacaAGAAGGCGGCCGugcuugccGCCGcCGAGa -3' miRNA: 3'- agaUGC----UCUUUCGCUGGC--------CGGC-GUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 32419 | 0.66 | 0.744377 |
Target: 5'- gCUGCGAGcu--CG-CCGGCCGCu-- -3' miRNA: 3'- aGAUGCUCuuucGCuGGCCGGCGuuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 36525 | 0.66 | 0.744377 |
Target: 5'- --cGCGGGGc-GCGACCugaaaGGCCuGCAAGa -3' miRNA: 3'- agaUGCUCUuuCGCUGG-----CCGG-CGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 42710 | 0.66 | 0.733695 |
Target: 5'- gUUGC-AGAGGGCGGCCGuuugugacuGCUGCAAa -3' miRNA: 3'- aGAUGcUCUUUCGCUGGC---------CGGCGUUc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 33501 | 0.66 | 0.733695 |
Target: 5'- --cGCGAGAAacucgccuucauGGCGACCGcGCagGCAAu -3' miRNA: 3'- agaUGCUCUU------------UCGCUGGC-CGg-CGUUc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 15553 | 0.66 | 0.733695 |
Target: 5'- cUCgGCGAGuAAGCGcgugGCCGGCCuGCc-- -3' miRNA: 3'- -AGaUGCUCuUUCGC----UGGCCGG-CGuuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 41860 | 0.66 | 0.722906 |
Target: 5'- --gACGGcacGAccGCGcCUGGCCGCGAGc -3' miRNA: 3'- agaUGCU---CUuuCGCuGGCCGGCGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 17023 | 0.66 | 0.722906 |
Target: 5'- aCUuCGAGAAcgaugucgcAGCGGCUGGUgGCGGc -3' miRNA: 3'- aGAuGCUCUU---------UCGCUGGCCGgCGUUc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 2751 | 0.66 | 0.722906 |
Target: 5'- aUCUGCGAGcAGAagucGCGACCGaCCgGCAu- -3' miRNA: 3'- -AGAUGCUC-UUU----CGCUGGCcGG-CGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 28306 | 0.67 | 0.712025 |
Target: 5'- aCUGCGcGAucGCGGCgcgaaucugguCGGCCGcCGAGc -3' miRNA: 3'- aGAUGCuCUuuCGCUG-----------GCCGGC-GUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 788 | 0.67 | 0.712025 |
Target: 5'- cCUuCGAccuuGAGCGuGCCGGCCGCcGGc -3' miRNA: 3'- aGAuGCUcu--UUCGC-UGGCCGGCGuUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 42635 | 0.67 | 0.701061 |
Target: 5'- gUCUACGccGAAGCGAagUGGCUGCGc- -3' miRNA: 3'- -AGAUGCucUUUCGCUg-GCCGGCGUuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 3672 | 0.67 | 0.701061 |
Target: 5'- cUCguuCGAGAcAGUG-CCGGCCGUc-- -3' miRNA: 3'- -AGau-GCUCUuUCGCuGGCCGGCGuuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 27378 | 0.67 | 0.701061 |
Target: 5'- --gGCGcGgcGGCGGCCGGCgCGCu-- -3' miRNA: 3'- agaUGCuCuuUCGCUGGCCG-GCGuuc -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 16202 | 0.67 | 0.690029 |
Target: 5'- --gACGAGcGAGGCuuuGAUCGGuuGCAGGu -3' miRNA: 3'- agaUGCUC-UUUCG---CUGGCCggCGUUC- -5' |
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24319 | 5' | -53.9 | NC_005263.2 | + | 20006 | 0.67 | 0.678938 |
Target: 5'- gUCaACGAc---GCGAUCGGCCGCGc- -3' miRNA: 3'- -AGaUGCUcuuuCGCUGGCCGGCGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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