miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 47773 0.69 0.494766
Target:  5'- gGCGCUUG-UCGCG-CucUGGCagugcgGUGCCg -3'
miRNA:   3'- -CGCGGACuAGCGCaGuuACCG------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 46816 0.67 0.654397
Target:  5'- aCGCC-GAUCGCGUaacgcaacgcgcgcCAGgcGGCGcGCCa -3'
miRNA:   3'- cGCGGaCUAGCGCA--------------GUUa-CCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 45888 0.69 0.537005
Target:  5'- aCGCCgUGAUCGCG-CAggGGCGaaaGaCCa -3'
miRNA:   3'- cGCGG-ACUAGCGCaGUuaCCGCa--C-GG- -5'
24320 3' -55.2 NC_005263.2 + 45778 0.67 0.623423
Target:  5'- cCGCacggUGcUCGCGUuccgccaguucaaCGcgGGCGUGCCg -3'
miRNA:   3'- cGCGg---ACuAGCGCA-------------GUuaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 45500 0.66 0.701563
Target:  5'- -gGCCUG-UCGCG-CAAUugGGCGaccuucacgacUGCCu -3'
miRNA:   3'- cgCGGACuAGCGCaGUUA--CCGC-----------ACGG- -5'
24320 3' -55.2 NC_005263.2 + 44655 0.68 0.555341
Target:  5'- uGCGCCUcGAU-GCGUCGcgcgcgccgaagaaGUcGGCG-GCCa -3'
miRNA:   3'- -CGCGGA-CUAgCGCAGU--------------UA-CCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 44006 0.67 0.624529
Target:  5'- aCGaCCUG-UCGCGUCcgcucggcaagGGUGGCGacuucGCCg -3'
miRNA:   3'- cGC-GGACuAGCGCAG-----------UUACCGCa----CGG- -5'
24320 3' -55.2 NC_005263.2 + 43135 0.71 0.414379
Target:  5'- cGUGCCUGGagCGCGccggaacUCAGucgucgcgcUGGCGUGCg -3'
miRNA:   3'- -CGCGGACUa-GCGC-------AGUU---------ACCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 42874 1.14 0.000381
Target:  5'- gGCGCCUGAUCGCGUCAAUGGCGUGCCg -3'
miRNA:   3'- -CGCGGACUAGCGCAGUUACCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 42126 0.67 0.624529
Target:  5'- aGCGUCgUGcugCGCGaCGA-GGCGUGUCg -3'
miRNA:   3'- -CGCGG-ACua-GCGCaGUUaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 42052 0.67 0.644448
Target:  5'- cGCGCgUGAagCGCGcCGccaacgaacggGGCGUGCUc -3'
miRNA:   3'- -CGCGgACUa-GCGCaGUua---------CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 41505 0.67 0.602425
Target:  5'- cGCGCCgccgaacgcGAUCGCGUCGAcuacuUGcGCcUGCg -3'
miRNA:   3'- -CGCGGa--------CUAGCGCAGUU-----AC-CGcACGg -5'
24320 3' -55.2 NC_005263.2 + 40900 0.69 0.537005
Target:  5'- uCGCCUGAUCGCuggaaaGGCGcaGCCg -3'
miRNA:   3'- cGCGGACUAGCGcaguuaCCGCa-CGG- -5'
24320 3' -55.2 NC_005263.2 + 39724 0.67 0.65771
Target:  5'- gGCGCg-GGcCGCGUCGAccUGGCGaGCg -3'
miRNA:   3'- -CGCGgaCUaGCGCAGUU--ACCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 38408 0.68 0.591407
Target:  5'- aCGCaCUGucgCGCGUCGGgugcgccGGCGUgacGCCg -3'
miRNA:   3'- cGCG-GACua-GCGCAGUUa------CCGCA---CGG- -5'
24320 3' -55.2 NC_005263.2 + 38355 0.69 0.537005
Target:  5'- gGCGaCCggcGAaaugCGCcUCGAaGGCGUGCCg -3'
miRNA:   3'- -CGC-GGa--CUa---GCGcAGUUaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 36100 0.73 0.327839
Target:  5'- cGCGCC--GUCGCGUUGAUGGcCGcGUCg -3'
miRNA:   3'- -CGCGGacUAGCGCAGUUACC-GCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 35980 0.72 0.361132
Target:  5'- cCGCCUGGagCGCGcgUAAUGGCGcgcgcGCCg -3'
miRNA:   3'- cGCGGACUa-GCGCa-GUUACCGCa----CGG- -5'
24320 3' -55.2 NC_005263.2 + 35501 0.73 0.289494
Target:  5'- aGCGUC--GUCGCgGUCAGUGGCcccguaaguGUGCCg -3'
miRNA:   3'- -CGCGGacUAGCG-CAGUUACCG---------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 35351 0.66 0.701563
Target:  5'- uGgGCCUGGUCG-GUC-GUGaGCGcagacgucgcagUGCCa -3'
miRNA:   3'- -CgCGGACUAGCgCAGuUAC-CGC------------ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.