Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24320 | 3' | -55.2 | NC_005263.2 | + | 40900 | 0.69 | 0.537005 |
Target: 5'- uCGCCUGAUCGCuggaaaGGCGcaGCCg -3' miRNA: 3'- cGCGGACUAGCGcaguuaCCGCa-CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 41505 | 0.67 | 0.602425 |
Target: 5'- cGCGCCgccgaacgcGAUCGCGUCGAcuacuUGcGCcUGCg -3' miRNA: 3'- -CGCGGa--------CUAGCGCAGUU-----AC-CGcACGg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 27248 | 0.67 | 0.602425 |
Target: 5'- aGCGCCguugcGAcgcUCGCGUCGAauuggcccgacUGcGCGagGCCg -3' miRNA: 3'- -CGCGGa----CU---AGCGCAGUU-----------AC-CGCa-CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 19401 | 0.67 | 0.600219 |
Target: 5'- cGCGCaguacggcaacGcgCGCGUUGAgguguucGGCGUGCCg -3' miRNA: 3'- -CGCGga---------CuaGCGCAGUUa------CCGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 16644 | 0.68 | 0.591407 |
Target: 5'- gGCGCC-GAacuugcaggcgcUCGCGUCGuucGGCGUGa- -3' miRNA: 3'- -CGCGGaCU------------AGCGCAGUua-CCGCACgg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 34103 | 0.68 | 0.590307 |
Target: 5'- uGCGCCUcg-CGCGUCAguucgaaGUGGaCGUGa- -3' miRNA: 3'- -CGCGGAcuaGCGCAGU-------UACC-GCACgg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 9135 | 0.68 | 0.568393 |
Target: 5'- uUGCC-GGUCGCGUCGugguucgucucauGcuuguUGGCcGUGCCg -3' miRNA: 3'- cGCGGaCUAGCGCAGU-------------U-----ACCG-CACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 29758 | 0.68 | 0.558596 |
Target: 5'- uGCGCCgGGUucUGCGgguUCAGcaGCGUGCCg -3' miRNA: 3'- -CGCGGaCUA--GCGC---AGUUacCGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 10914 | 0.68 | 0.552091 |
Target: 5'- cGCGCUgggggaugccgcacgUGAUCGCGUCGugcggGGUGaGCg -3' miRNA: 3'- -CGCGG---------------ACUAGCGCAGUua---CCGCaCGg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 18907 | 0.67 | 0.613469 |
Target: 5'- cGCGCCgGccUGCGUCGA--GCGUGaCCg -3' miRNA: 3'- -CGCGGaCuaGCGCAGUUacCGCAC-GG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 16769 | 0.67 | 0.613469 |
Target: 5'- cGCGCCUGA-CG-GcCGccGGCGUaucGCCg -3' miRNA: 3'- -CGCGGACUaGCgCaGUuaCCGCA---CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 45778 | 0.67 | 0.623423 |
Target: 5'- cCGCacggUGcUCGCGUuccgccaguucaaCGcgGGCGUGCCg -3' miRNA: 3'- cGCGg---ACuAGCGCA-------------GUuaCCGCACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 45500 | 0.66 | 0.701563 |
Target: 5'- -gGCCUG-UCGCG-CAAUugGGCGaccuucacgacUGCCu -3' miRNA: 3'- cgCGGACuAGCGCaGUUA--CCGC-----------ACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 34715 | 0.66 | 0.690674 |
Target: 5'- cGCGCCUgcacacGAUCGUGUCccggccGGUaGGCGacaUGCUc -3' miRNA: 3'- -CGCGGA------CUAGCGCAG------UUA-CCGC---ACGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 24761 | 0.66 | 0.690674 |
Target: 5'- cGgGCCUGcuacuGUCGC-UCAcgGGCG-GCg -3' miRNA: 3'- -CgCGGAC-----UAGCGcAGUuaCCGCaCGg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 39724 | 0.67 | 0.65771 |
Target: 5'- gGCGCg-GGcCGCGUCGAccUGGCGaGCg -3' miRNA: 3'- -CGCGgaCUaGCGCAGUU--ACCGCaCGg -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 9657 | 0.66 | 0.673138 |
Target: 5'- aGCGUCUcGAUCGcCGUCuugaccguggccGGCGUcacGCCg -3' miRNA: 3'- -CGCGGA-CUAGC-GCAGuua---------CCGCA---CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 46816 | 0.67 | 0.654397 |
Target: 5'- aCGCC-GAUCGCGUaacgcaacgcgcgcCAGgcGGCGcGCCa -3' miRNA: 3'- cGCGGaCUAGCGCA--------------GUUa-CCGCaCGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 19625 | 0.67 | 0.64666 |
Target: 5'- aCGCCUcGUaCGCGUUGAUGGCugaagugauGUcGCCg -3' miRNA: 3'- cGCGGAcUA-GCGCAGUUACCG---------CA-CGG- -5' |
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24320 | 3' | -55.2 | NC_005263.2 | + | 44006 | 0.67 | 0.624529 |
Target: 5'- aCGaCCUG-UCGCGUCcgcucggcaagGGUGGCGacuucGCCg -3' miRNA: 3'- cGC-GGACuAGCGCAG-----------UUACCGCa----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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