miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 3' -62.6 NC_005263.2 + 47263 0.72 0.115782
Target:  5'- aCGCUGUCCGCGCuCG-GUAGuGaCGUGCg -3'
miRNA:   3'- -GCGACGGGCGCGcGCuCGUC-C-GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 46672 0.68 0.241924
Target:  5'- cCGCgaaGCCuCGCGCGC-AGCcaAGGCG-GCg -3'
miRNA:   3'- -GCGa--CGG-GCGCGCGcUCG--UCCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 45782 0.66 0.30197
Target:  5'- aCGgUGCUCGCGUuccGCcaguucaacGCGGGCGUGCc -3'
miRNA:   3'- -GCgACGGGCGCG---CGcu-------CGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 45567 0.67 0.273961
Target:  5'- uCGCgGCCUG-GaacaGCGGuCAGGCGUACa -3'
miRNA:   3'- -GCGaCGGGCgCg---CGCUcGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 45426 0.66 0.309309
Target:  5'- cCGCcGCCgGCGCGacacuGCAGGC-UGCc -3'
miRNA:   3'- -GCGaCGGgCGCGCgcu--CGUCCGcAUG- -5'
24322 3' -62.6 NC_005263.2 + 44881 0.76 0.062978
Target:  5'- uGCUGCCCG-GCGUcaucgGGGCGGGCGgcgGCc -3'
miRNA:   3'- gCGACGGGCgCGCG-----CUCGUCCGCa--UG- -5'
24322 3' -62.6 NC_005263.2 + 44810 0.67 0.248072
Target:  5'- gCGCcG-CCGCGCGCacaagGAGaaaGGGCGUAUg -3'
miRNA:   3'- -GCGaCgGGCGCGCG-----CUCg--UCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 44761 0.69 0.207666
Target:  5'- uCGCUcGaCCGCGCGCGGcGCcGGCG-GCg -3'
miRNA:   3'- -GCGA-CgGGCGCGCGCU-CGuCCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 44354 1.08 0.000166
Target:  5'- cCGCUGCCCGCGCGCGAGCAGGCGUACu -3'
miRNA:   3'- -GCGACGGGCGCGCGCUCGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 41476 0.67 0.260755
Target:  5'- gCGCUGCUcgaCGCGgGCGAGUcGGcCGUc- -3'
miRNA:   3'- -GCGACGG---GCGCgCGCUCGuCC-GCAug -5'
24322 3' -62.6 NC_005263.2 + 41351 0.69 0.187223
Target:  5'- aGCUcGCCCgGCGCGCGAuggacgugacgcGCgAGuGUGUACg -3'
miRNA:   3'- gCGA-CGGG-CGCGCGCU------------CG-UC-CGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 40624 0.67 0.280762
Target:  5'- gCGCggcacuucgagGCCaaGCGCGCaAGC-GGCGUGCa -3'
miRNA:   3'- -GCGa----------CGGg-CGCGCGcUCGuCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 39297 0.66 0.316782
Target:  5'- aGCgGCCggcaggcgcaugCGCGCGCGAucGCAGGUugGCu -3'
miRNA:   3'- gCGaCGG------------GCGCGCGCU--CGUCCGcaUG- -5'
24322 3' -62.6 NC_005263.2 + 38100 0.67 0.273961
Target:  5'- uGCUgcGCCCGCaccugGCGCGcaagacGGCGaaccggacGGCGUGCg -3'
miRNA:   3'- gCGA--CGGGCG-----CGCGC------UCGU--------CCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 38032 0.68 0.23001
Target:  5'- gCGCUGCCCGCGuCGCucGGCuuccaGUGCg -3'
miRNA:   3'- -GCGACGGGCGC-GCGc-UCGuccg-CAUG- -5'
24322 3' -62.6 NC_005263.2 + 35775 0.66 0.308569
Target:  5'- gGCUGgCgGCGUGCcauagcaGAGCAGguaacGCGUGCc -3'
miRNA:   3'- gCGACgGgCGCGCG-------CUCGUC-----CGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 35534 0.8 0.026146
Target:  5'- uGC-GCCCggcgGCGCGCGGGCGGGCGcUACg -3'
miRNA:   3'- gCGaCGGG----CGCGCGCUCGUCCGC-AUG- -5'
24322 3' -62.6 NC_005263.2 + 34265 0.69 0.197214
Target:  5'- aGCUGCCCGaguacCGCGCGAuGCAcGaaGUGCu -3'
miRNA:   3'- gCGACGGGC-----GCGCGCU-CGU-CcgCAUG- -5'
24322 3' -62.6 NC_005263.2 + 33427 0.66 0.30197
Target:  5'- aGC-GCCgCGCGCGCGuAGCGGuCGgcCa -3'
miRNA:   3'- gCGaCGG-GCGCGCGC-UCGUCcGCauG- -5'
24322 3' -62.6 NC_005263.2 + 32711 0.68 0.22424
Target:  5'- uGCUGCCCGcCGUGCGGaucgccaauGCAa-CGUACg -3'
miRNA:   3'- gCGACGGGC-GCGCGCU---------CGUccGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.