miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 47709 0.71 0.451841
Target:  5'- aGGAuCGUGCGc-UCuACGCGCuCGGCAa -3'
miRNA:   3'- -CCU-GUACGCauAGuUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47402 0.72 0.39323
Target:  5'- uGAaaaaGUGCGUcgaguucAUCGGCGCGCuCGGCAa -3'
miRNA:   3'- cCUg---UACGCA-------UAGUUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47372 0.77 0.187688
Target:  5'- uGGGCGgcGCGU-UCGAUGCGCGCGaGCAc -3'
miRNA:   3'- -CCUGUa-CGCAuAGUUGCGCGCGC-CGU- -5'
24322 5' -54.4 NC_005263.2 + 46962 0.67 0.668115
Target:  5'- cGGAUAcGCGgugCAACGCcguGCGCaGCAc -3'
miRNA:   3'- -CCUGUaCGCauaGUUGCG---CGCGcCGU- -5'
24322 5' -54.4 NC_005263.2 + 46824 0.7 0.513848
Target:  5'- -----cGCGUAacgCAACGCGCGCcaGGCGg -3'
miRNA:   3'- ccuguaCGCAUa--GUUGCGCGCG--CCGU- -5'
24322 5' -54.4 NC_005263.2 + 46100 0.69 0.54614
Target:  5'- uGACGUcGgGUAUCAucCGCGC-CGGCGu -3'
miRNA:   3'- cCUGUA-CgCAUAGUu-GCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 44886 0.68 0.601236
Target:  5'- --cCcgGCGUcAUCGGgGCGgGCGGCGg -3'
miRNA:   3'- ccuGuaCGCA-UAGUUgCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 44835 0.7 0.472075
Target:  5'- cGGACugcgagGCGaUAcUCGACGCcugucuGCGCGGCGa -3'
miRNA:   3'- -CCUGua----CGC-AU-AGUUGCG------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 44388 1.11 0.00083
Target:  5'- uGGACAUGCGUAUCAACGCGCGCGGCAu -3'
miRNA:   3'- -CCUGUACGCAUAGUUGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 43830 0.75 0.257898
Target:  5'- cGGGCAcgaUGUucGUGUCGaccgggcgcaacaACGUGCGCGGCAu -3'
miRNA:   3'- -CCUGU---ACG--CAUAGU-------------UGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 43301 0.68 0.623526
Target:  5'- cGGGCG-GCGUAUgAgcgucACGCGaCGCGGg- -3'
miRNA:   3'- -CCUGUaCGCAUAgU-----UGCGC-GCGCCgu -5'
24322 5' -54.4 NC_005263.2 + 43208 0.67 0.694647
Target:  5'- cGACGgcGCGcUAUCGcaGCGCGCgcuacauggugagcgGCGGCAg -3'
miRNA:   3'- cCUGUa-CGC-AUAGU--UGCGCG---------------CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 43085 0.66 0.744357
Target:  5'- cGGGCcgGC-UGUCGA---GCGCGGCGg -3'
miRNA:   3'- -CCUGuaCGcAUAGUUgcgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 41708 0.73 0.34987
Target:  5'- cGGGCAaGgagaacauccuCGUAcUCGACGCGgGCGGCAa -3'
miRNA:   3'- -CCUGUaC-----------GCAU-AGUUGCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 41148 0.68 0.612372
Target:  5'- cGGAaaCcgGCGUucgcgCGGCGUGgGCGGCc -3'
miRNA:   3'- -CCU--GuaCGCAua---GUUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 40436 0.67 0.656993
Target:  5'- uGGCAUGUGaAUaCAGCGgGCGUGuGCGc -3'
miRNA:   3'- cCUGUACGCaUA-GUUGCgCGCGC-CGU- -5'
24322 5' -54.4 NC_005263.2 + 39503 0.69 0.557053
Target:  5'- uGGGCAgaguuuaagGCGaagAUgGAaGCGCGCGGCGu -3'
miRNA:   3'- -CCUGUa--------CGCa--UAgUUgCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 39115 0.68 0.601236
Target:  5'- gGGACGUG-GUggccggccagAUCAACGuCG-GCGGCAc -3'
miRNA:   3'- -CCUGUACgCA----------UAGUUGC-GCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 39070 0.71 0.412851
Target:  5'- cGGACGU-CGUAgccggcUCGcCGuCGCGCGGCAc -3'
miRNA:   3'- -CCUGUAcGCAU------AGUuGC-GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 38433 0.72 0.394151
Target:  5'- cGACGUGCGUu---ACGUGCucgGCGGCGa -3'
miRNA:   3'- cCUGUACGCAuaguUGCGCG---CGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.