miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 32547 0.67 0.645846
Target:  5'- --uUcgGCGU-UCAGCGCGCGCGucuGCGc -3'
miRNA:   3'- ccuGuaCGCAuAGUUGCGCGCGC---CGU- -5'
24322 5' -54.4 NC_005263.2 + 4553 0.67 0.690245
Target:  5'- cGACG-GCGgcAUUGACGCGUauauaGCGGCAa -3'
miRNA:   3'- cCUGUaCGCa-UAGUUGCGCG-----CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 26183 0.67 0.690245
Target:  5'- aGGACGgucUGCGg--CcGCGCG-GCGGCc -3'
miRNA:   3'- -CCUGU---ACGCauaGuUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 21626 0.67 0.679204
Target:  5'- aGGCgcaGUGCGg--CGACGCGCGgcguaUGGCAc -3'
miRNA:   3'- cCUG---UACGCauaGUUGCGCGC-----GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 8261 0.67 0.679204
Target:  5'- cGGGUAUGCGcGUucggacggccaCAGCGCGaGCGGCGu -3'
miRNA:   3'- -CCUGUACGCaUA-----------GUUGCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 46962 0.67 0.668115
Target:  5'- cGGAUAcGCGgugCAACGCcguGCGCaGCAc -3'
miRNA:   3'- -CCUGUaCGCauaGUUGCG---CGCGcCGU- -5'
24322 5' -54.4 NC_005263.2 + 40436 0.67 0.656993
Target:  5'- uGGCAUGUGaAUaCAGCGgGCGUGuGCGc -3'
miRNA:   3'- cCUGUACGCaUA-GUUGCgCGCGC-CGU- -5'
24322 5' -54.4 NC_005263.2 + 9209 0.67 0.645846
Target:  5'- cGGGCG-GCGc-UCGuACgGCGCGCGGUAc -3'
miRNA:   3'- -CCUGUaCGCauAGU-UG-CGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 35530 0.67 0.645846
Target:  5'- cGAC-UGCGcccggCGGCGCGCG-GGCGg -3'
miRNA:   3'- cCUGuACGCaua--GUUGCGCGCgCCGU- -5'
24322 5' -54.4 NC_005263.2 + 43208 0.67 0.694647
Target:  5'- cGACGgcGCGcUAUCGcaGCGCGCgcuacauggugagcgGCGGCAg -3'
miRNA:   3'- cCUGUa-CGC-AUAGU--UGCGCG---------------CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 32084 0.66 0.70123
Target:  5'- -aACGUGCGUc---ACGUGCGgCGGCGu -3'
miRNA:   3'- ccUGUACGCAuaguUGCGCGC-GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 27328 0.66 0.70123
Target:  5'- cGACGcGCcgacgAUCAGCG-GCGCGGCc -3'
miRNA:   3'- cCUGUaCGca---UAGUUGCgCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 29014 0.66 0.744357
Target:  5'- cGGCAgUGCGUugcgcaccgCGACGCcguacugacGCGCGGCc -3'
miRNA:   3'- cCUGU-ACGCAua-------GUUGCG---------CGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 8571 0.66 0.744357
Target:  5'- cGAUcgGCGUGUCGuccguuACGC-CGCGcGCu -3'
miRNA:   3'- cCUGuaCGCAUAGU------UGCGcGCGC-CGu -5'
24322 5' -54.4 NC_005263.2 + 22513 0.66 0.733721
Target:  5'- cGGCGcacuccguUGCG-AUCAGCGUGacggGCGGCGc -3'
miRNA:   3'- cCUGU--------ACGCaUAGUUGCGCg---CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 28424 0.66 0.722979
Target:  5'- cGGCAcGCGcGUgAACGUcgcgggcaGCGCGGCGu -3'
miRNA:   3'- cCUGUaCGCaUAgUUGCG--------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 18912 0.66 0.712145
Target:  5'- cGGCcUGCGUcgagcgUGAC-CGCGCGGCAc -3'
miRNA:   3'- cCUGuACGCAua----GUUGcGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 35985 0.66 0.712145
Target:  5'- uGGAgCGcGCGUAaUGGCGCGCGCGccGCu -3'
miRNA:   3'- -CCU-GUaCGCAUaGUUGCGCGCGC--CGu -5'
24322 5' -54.4 NC_005263.2 + 10308 0.66 0.705605
Target:  5'- uGGCcUGCGUgacgaaacgacgcucGUCGaucucGCGCagGCGCGGCAg -3'
miRNA:   3'- cCUGuACGCA---------------UAGU-----UGCG--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 30436 0.66 0.70123
Target:  5'- cGGuCGaGCGcgagCAGCGUgaGCGCGGCGg -3'
miRNA:   3'- -CCuGUaCGCaua-GUUGCG--CGCGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.