miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 3' -53.5 NC_005263.2 + 48023 0.69 0.567776
Target:  5'- cCGGCggGCAgGCGCUAUGCGAUuaCUACCu -3'
miRNA:   3'- -GCUGa-CGU-CGUGGUGUGCUA--GAUGGu -5'
24324 3' -53.5 NC_005263.2 + 46653 0.67 0.718028
Target:  5'- -uGCUGCAGCGCCGCGagcgccgcgaagccuCGcgCgcaGCCAa -3'
miRNA:   3'- gcUGACGUCGUGGUGU---------------GCuaGa--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 45417 0.68 0.612666
Target:  5'- --cCUGCcgAGCgGCCGCGCGAUCagcUACCAc -3'
miRNA:   3'- gcuGACG--UCG-UGGUGUGCUAG---AUGGU- -5'
24324 3' -53.5 NC_005263.2 + 44719 1.09 0.001208
Target:  5'- cCGACUGCAGCACCACACGAUCUACCAu -3'
miRNA:   3'- -GCUGACGUCGUGGUGUGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 44502 0.66 0.735449
Target:  5'- cCGACgGCGGCAuCCugGCcGUC-ACCGa -3'
miRNA:   3'- -GCUGaCGUCGU-GGugUGcUAGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 44071 0.77 0.223666
Target:  5'- gCGGCgGCAGCgggGCUAuCACGAUCUGCCu -3'
miRNA:   3'- -GCUGaCGUCG---UGGU-GUGCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 42322 0.68 0.635257
Target:  5'- aCGGCgcaGCGGCGCgUGCGCGA-CUAUCAa -3'
miRNA:   3'- -GCUGa--CGUCGUG-GUGUGCUaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 42248 0.68 0.657835
Target:  5'- cCGcCUGCGGCucgacuucgACCGCACGAcg-GCCGa -3'
miRNA:   3'- -GCuGACGUCG---------UGGUGUGCUagaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 41741 0.68 0.669092
Target:  5'- gCGGCaacuucggGCGGCACgGCGCGAUCaACgAg -3'
miRNA:   3'- -GCUGa-------CGUCGUGgUGUGCUAGaUGgU- -5'
24324 3' -53.5 NC_005263.2 + 41483 0.66 0.767316
Target:  5'- gCGACUGCucgaccGCGCCGaGCGcgCcGCCGa -3'
miRNA:   3'- -GCUGACGu-----CGUGGUgUGCuaGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 40562 0.69 0.556669
Target:  5'- uCGACcuuggGUGGgACUugAUGAUCUGCCAu -3'
miRNA:   3'- -GCUGa----CGUCgUGGugUGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 36303 0.68 0.612666
Target:  5'- aCGACaUGCAGCGaCACGCGAcgUCcugcGCCAu -3'
miRNA:   3'- -GCUG-ACGUCGUgGUGUGCU--AGa---UGGU- -5'
24324 3' -53.5 NC_005263.2 + 35529 0.66 0.756823
Target:  5'- cCGACUGCgcccGGCGgCGCGCGGgcgggcgCUACg- -3'
miRNA:   3'- -GCUGACG----UCGUgGUGUGCUa------GAUGgu -5'
24324 3' -53.5 NC_005263.2 + 34711 0.66 0.756823
Target:  5'- gCGAC-GCGcCugCACACGAUCgugucccgGCCGg -3'
miRNA:   3'- -GCUGaCGUcGugGUGUGCUAGa-------UGGU- -5'
24324 3' -53.5 NC_005263.2 + 34009 0.67 0.724591
Target:  5'- uGGCUGCGucGCGgCGCGCGAUCcagaGCUg -3'
miRNA:   3'- gCUGACGU--CGUgGUGUGCUAGa---UGGu -5'
24324 3' -53.5 NC_005263.2 + 32496 0.66 0.746197
Target:  5'- gCGACgGCAGUuCCgACGCGAUaagcGCCAg -3'
miRNA:   3'- -GCUGaCGUCGuGG-UGUGCUAga--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 32003 0.68 0.609282
Target:  5'- uCGGCUGCcguAGCugCGCGggugaacagccggcCGAUCUGCUc -3'
miRNA:   3'- -GCUGACG---UCGugGUGU--------------GCUAGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 28123 0.66 0.756823
Target:  5'- aCGGCaGUGGCGCCgucuuGCACG--CUGCCAg -3'
miRNA:   3'- -GCUGaCGUCGUGG-----UGUGCuaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 27612 0.66 0.756823
Target:  5'- uCGACgUGCGGCGCg--ACGGUCgACCAc -3'
miRNA:   3'- -GCUG-ACGUCGUGgugUGCUAGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 26857 0.67 0.713636
Target:  5'- ----aGCAGCACUGCGCGG-CUACUu -3'
miRNA:   3'- gcugaCGUCGUGGUGUGCUaGAUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.