miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 3' -53.5 NC_005263.2 + 16486 0.7 0.534653
Target:  5'- aCGGC-GCuGCGCCGCGCGGccgUCgcgACCGg -3'
miRNA:   3'- -GCUGaCGuCGUGGUGUGCU---AGa--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 20315 0.68 0.623958
Target:  5'- aCGACgGCGauGUACCGCGCGAagcauggcCUGCCGc -3'
miRNA:   3'- -GCUGaCGU--CGUGGUGUGCUa-------GAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 3333 0.68 0.623958
Target:  5'- aCGuCUGCgcgccgccGGCGCCgcGCGCGGUCgagcgACCAg -3'
miRNA:   3'- -GCuGACG--------UCGUGG--UGUGCUAGa----UGGU- -5'
24324 3' -53.5 NC_005263.2 + 15891 0.69 0.601393
Target:  5'- -cGCUGCAGCuuuaCACGCuGAUCUcGCCGc -3'
miRNA:   3'- gcUGACGUCGug--GUGUG-CUAGA-UGGU- -5'
24324 3' -53.5 NC_005263.2 + 21469 0.69 0.572235
Target:  5'- -cGCUGCGGCGCCACugGcaaauccggcgcaccGUCgauUACCGc -3'
miRNA:   3'- gcUGACGUCGUGGUGugC---------------UAG---AUGGU- -5'
24324 3' -53.5 NC_005263.2 + 22110 0.69 0.567776
Target:  5'- aCGGCUGCcgccGGCACgcugcaaGCGCGAUC-GCCGg -3'
miRNA:   3'- -GCUGACG----UCGUGg------UGUGCUAGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 48023 0.69 0.567776
Target:  5'- cCGGCggGCAgGCGCUAUGCGAUuaCUACCu -3'
miRNA:   3'- -GCUGa-CGU-CGUGGUGUGCUA--GAUGGu -5'
24324 3' -53.5 NC_005263.2 + 40562 0.69 0.556669
Target:  5'- uCGACcuuggGUGGgACUugAUGAUCUGCCAu -3'
miRNA:   3'- -GCUGa----CGUCgUGGugUGCUAGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 26186 0.7 0.545625
Target:  5'- aCGGuCUGCGGCcgcgcggcgGCCGCGCGAUgCggcgGCCGu -3'
miRNA:   3'- -GCU-GACGUCG---------UGGUGUGCUA-Ga---UGGU- -5'
24324 3' -53.5 NC_005263.2 + 42322 0.68 0.635257
Target:  5'- aCGGCgcaGCGGCGCgUGCGCGA-CUAUCAa -3'
miRNA:   3'- -GCUGa--CGUCGUG-GUGUGCUaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 13465 0.67 0.680312
Target:  5'- gGGCUGCcuGCGCUGCcauggggaACGAUCUACg- -3'
miRNA:   3'- gCUGACGu-CGUGGUG--------UGCUAGAUGgu -5'
24324 3' -53.5 NC_005263.2 + 16715 0.67 0.691485
Target:  5'- -aGCUGCAGCgcaccuACCGCGCGAgCaGCCc -3'
miRNA:   3'- gcUGACGUCG------UGGUGUGCUaGaUGGu -5'
24324 3' -53.5 NC_005263.2 + 35529 0.66 0.756823
Target:  5'- cCGACUGCgcccGGCGgCGCGCGGgcgggcgCUACg- -3'
miRNA:   3'- -GCUGACG----UCGUgGUGUGCUa------GAUGgu -5'
24324 3' -53.5 NC_005263.2 + 34711 0.66 0.756823
Target:  5'- gCGAC-GCGcCugCACACGAUCgugucccgGCCGg -3'
miRNA:   3'- -GCUGaCGUcGugGUGUGCUAGa-------UGGU- -5'
24324 3' -53.5 NC_005263.2 + 28123 0.66 0.756823
Target:  5'- aCGGCaGUGGCGCCgucuuGCACG--CUGCCAg -3'
miRNA:   3'- -GCUGaCGUCGUGG-----UGUGCuaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 27612 0.66 0.756823
Target:  5'- uCGACgUGCGGCGCg--ACGGUCgACCAc -3'
miRNA:   3'- -GCUG-ACGUCGUGgugUGCUAGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 824 0.66 0.735449
Target:  5'- gGACUGCgcuucGGCG-CGCACGucaCUACCGa -3'
miRNA:   3'- gCUGACG-----UCGUgGUGUGCua-GAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 9478 0.66 0.735449
Target:  5'- cCGGCUGCAGCugacGCUuCACGAU--GCCc -3'
miRNA:   3'- -GCUGACGUCG----UGGuGUGCUAgaUGGu -5'
24324 3' -53.5 NC_005263.2 + 21042 0.67 0.724591
Target:  5'- aCGGCgUGCAGCAugcaacgcauauCCACgACGAUCcacaaggcgGCCAg -3'
miRNA:   3'- -GCUG-ACGUCGU------------GGUG-UGCUAGa--------UGGU- -5'
24324 3' -53.5 NC_005263.2 + 26857 0.67 0.713636
Target:  5'- ----aGCAGCACUGCGCGG-CUACUu -3'
miRNA:   3'- gcugaCGUCGUGGUGUGCUaGAUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.